Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FFV09_RS07835 Genome accession   NZ_CP041217
Coordinates   1839335..1840714 (-) Length   459 a.a.
NCBI ID   WP_141447311.1    Uniprot ID   -
Organism   Saccharibacillus brassicae strain ATSA2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1834335..1845714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFV09_RS07815 (FFV09_07815) gltX 1835372..1836829 (-) 1458 WP_141447308.1 glutamate--tRNA ligase -
  FFV09_RS07820 (FFV09_07820) ispF 1836865..1837353 (-) 489 WP_141450385.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  FFV09_RS07825 (FFV09_07825) ispD 1837353..1838051 (-) 699 WP_141447309.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FFV09_RS07830 (FFV09_07830) disA 1838223..1839296 (-) 1074 WP_141447310.1 DNA integrity scanning diadenylate cyclase DisA -
  FFV09_RS07835 (FFV09_07835) radA 1839335..1840714 (-) 1380 WP_141447311.1 DNA repair protein RadA Machinery gene
  FFV09_RS07840 (FFV09_07840) clpC 1841001..1843463 (-) 2463 WP_141447312.1 ATP-dependent protease ATP-binding subunit ClpC -
  FFV09_RS07845 (FFV09_07845) - 1843530..1844594 (-) 1065 WP_141447313.1 protein arginine kinase -
  FFV09_RS07850 (FFV09_07850) - 1844610..1845134 (-) 525 WP_141447314.1 UvrB/UvrC motif-containing protein -
  FFV09_RS07855 (FFV09_07855) - 1845183..1845650 (-) 468 WP_141447315.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49793.45 Da        Isoelectric Point: 6.8220

>NTDB_id=370638 FFV09_RS07835 WP_141447311.1 1839335..1840714(-) (radA) [Saccharibacillus brassicae strain ATSA2]
MAKTKTKFYCTECGYESPKWYGKCPGCQSWNSMVEETVSSSVKTQGMGGMNSSLLQGTQKPLSIVDIEGGQEPRVDTKIG
ELNRVLGGGMVPGSLILVGGDPGIGKSTLLLQTSHSLAATGLKVLYISGEESVKQTKLRAERLGALSPQLYVLCESNMEQ
VELAIEQIAPDFLVIDSIQTVYQPDVTSAPGSVSQVRECTARFMRIAKNGGIATVLVGHVTKEGAIAGPRMLEHMVDCVL
YFEGERHHTYRILRAVKNRFGSTNEMGIFEMREEGLEEVTNPSELFLSERAMGVSGTTVVASMEGTRPVLVELQALVATT
HFPSPRRMGTGIDYNRLNLIIAVLEKRMGLYMQTQDAYVNVAGGVRLDEPAVDLAVAVCIASSVQDKPTRPYDVVFGEIG
LTGEVRAVSRAEQRVKEALKLGFKRVILPAKSLKGWKHPQGIELIGVETVSQALKAALE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=370638 FFV09_RS07835 WP_141447311.1 1839335..1840714(-) (radA) [Saccharibacillus brassicae strain ATSA2]
ATGGCCAAGACGAAAACGAAGTTTTATTGCACCGAGTGCGGCTATGAGTCGCCGAAATGGTACGGAAAATGTCCCGGCTG
CCAATCGTGGAATTCCATGGTGGAAGAAACGGTCAGCAGCAGCGTGAAGACCCAGGGGATGGGCGGCATGAATTCTTCCC
TGCTGCAGGGTACGCAGAAGCCACTGTCCATCGTGGATATCGAAGGCGGGCAGGAACCCCGCGTAGATACGAAGATCGGC
GAACTGAACCGGGTGCTCGGCGGGGGCATGGTACCCGGTTCGCTGATTCTCGTCGGCGGCGATCCCGGCATCGGCAAATC
GACGCTGCTGCTGCAAACGTCGCATTCGCTTGCGGCCACGGGACTCAAAGTGCTGTACATTTCCGGCGAGGAATCGGTGA
AGCAGACGAAGCTGCGCGCCGAGCGGCTCGGCGCGCTGTCGCCGCAGCTGTACGTCCTGTGCGAGAGCAACATGGAGCAG
GTCGAGCTTGCGATCGAACAGATCGCGCCGGACTTCCTCGTCATCGACTCTATTCAGACCGTGTACCAACCGGACGTGAC
GAGCGCGCCGGGCAGCGTCTCGCAGGTGCGGGAATGCACGGCCCGGTTCATGCGGATTGCCAAGAACGGCGGCATCGCGA
CCGTGCTGGTCGGCCATGTCACGAAGGAAGGCGCAATCGCCGGACCGCGGATGCTGGAACATATGGTCGACTGCGTCTTG
TATTTCGAAGGCGAGCGCCATCACACGTACCGGATTTTGCGGGCGGTCAAGAACCGCTTCGGATCGACGAATGAAATGGG
CATTTTCGAGATGCGCGAGGAAGGCCTCGAAGAGGTCACCAATCCGTCGGAGCTGTTCTTGTCCGAGCGGGCCATGGGCG
TATCCGGCACGACCGTCGTCGCCAGCATGGAAGGCACGCGTCCCGTGCTGGTCGAGCTGCAGGCGCTGGTCGCGACGACG
CATTTCCCTTCGCCGAGAAGAATGGGCACCGGCATCGACTACAATCGGCTGAACCTGATCATCGCCGTGCTGGAGAAACG
GATGGGCCTGTACATGCAGACGCAGGACGCCTACGTCAACGTGGCGGGCGGCGTCCGGCTGGACGAGCCGGCGGTCGACC
TGGCCGTGGCGGTCTGCATCGCCTCAAGCGTCCAGGACAAGCCGACACGGCCGTACGACGTCGTCTTCGGCGAGATCGGC
CTTACCGGCGAGGTGCGGGCCGTGTCGCGGGCGGAGCAGCGCGTCAAGGAAGCGTTGAAATTGGGATTCAAACGGGTTAT
TTTGCCCGCGAAAAGTTTAAAAGGATGGAAGCACCCGCAAGGGATCGAGCTGATCGGCGTAGAGACCGTTTCGCAGGCGC
TCAAAGCGGCGCTAGAGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(348-431)

AAA domain (AAA_25)

(76-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.376

99.782

0.662
  radA Streptococcus pneumoniae Rx1

57.86

99.782

0.577
  radA Streptococcus pneumoniae D39

57.86

99.782

0.577
  radA Streptococcus pneumoniae R6

57.86

99.782

0.577
  radA Streptococcus pneumoniae TIGR4

57.86

99.782

0.577
  radA Streptococcus mitis NCTC 12261

57.86

99.782

0.577
  radA Streptococcus mitis SK321

57.86

99.782

0.577

Multiple sequence alignment