Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   G3R55_RS03020 Genome accession   NZ_CP048769
Coordinates   576278..576661 (+) Length   127 a.a.
NCBI ID   WP_002898550.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZJB020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 571278..581661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3R55_RS03000 (G3R55_03005) - 571357..573291 (-) 1935 WP_087695607.1 ribonuclease R family protein -
  G3R55_RS03005 (G3R55_03010) ilvC 573410..574432 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  G3R55_RS03010 (G3R55_03015) - 574436..575518 (+) 1083 WP_052817304.1 divergent polysaccharide deacetylase family protein -
  G3R55_RS03015 (G3R55_03020) dprA 575508..576281 (+) 774 WP_052794066.1 DNA-processing protein DprA Machinery gene
  G3R55_RS03020 (G3R55_03025) dprB 576278..576661 (+) 384 WP_002898550.1 Holliday junction resolvase RuvX Machinery gene
  G3R55_RS03025 (G3R55_03030) - 576690..577529 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  G3R55_RS03030 (G3R55_03035) msrA 577705..578202 (-) 498 WP_167861639.1 peptide-methionine (S)-S-oxide reductase MsrA -
  G3R55_RS03035 (G3R55_03040) ppa 578244..578762 (-) 519 WP_002871349.1 inorganic diphosphatase -
  G3R55_RS03040 (G3R55_03045) adk 578772..579350 (-) 579 WP_167861640.1 adenylate kinase -
  G3R55_RS03045 (G3R55_03050) aspS 579347..581098 (-) 1752 WP_052817309.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14144.66 Da        Isoelectric Point: 9.0848

>NTDB_id=370632 G3R55_RS03020 WP_002898550.1 576278..576661(+) (dprB) [Campylobacter jejuni strain ZJB020]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGVANTRKKDGKLDSLAAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=370632 G3R55_RS03020 WP_002898550.1 576278..576661(+) (dprB) [Campylobacter jejuni strain ZJB020]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGTTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGAATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGATTCTTTAGCTGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449