Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   FFV09_RS02615 Genome accession   NZ_CP041217
Coordinates   663953..664318 (+) Length   121 a.a.
NCBI ID   WP_281288490.1    Uniprot ID   -
Organism   Saccharibacillus brassicae strain ATSA2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 658953..669318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFV09_RS02600 (FFV09_02600) - 661002..661244 (-) 243 WP_141446238.1 hypothetical protein -
  FFV09_RS02605 (FFV09_02605) - 661410..663227 (-) 1818 WP_141446239.1 APC family permease -
  FFV09_RS02610 (FFV09_02610) - 663564..663746 (+) 183 WP_141446240.1 hypothetical protein -
  FFV09_RS02615 (FFV09_02615) nucA/comI 663953..664318 (+) 366 WP_281288490.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  FFV09_RS02620 (FFV09_02620) - 664334..664705 (+) 372 WP_170314914.1 DUF202 domain-containing protein -
  FFV09_RS23660 - 665215..665352 (+) 138 WP_170314915.1 hypothetical protein -
  FFV09_RS02625 (FFV09_02625) - 665672..666298 (+) 627 WP_141446243.1 FMN-dependent NADH-azoreductase -
  FFV09_RS02630 (FFV09_02630) - 666572..666802 (-) 231 WP_141446244.1 hypothetical protein -
  FFV09_RS23665 - 667022..667171 (+) 150 WP_170314916.1 hypothetical protein -
  FFV09_RS02635 (FFV09_02635) - 667269..668219 (-) 951 WP_141446245.1 ring-cleaving dioxygenase -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13189.40 Da        Isoelectric Point: 4.0690

>NTDB_id=370630 FFV09_RS02615 WP_281288490.1 663953..664318(+) (nucA/comI) [Saccharibacillus brassicae strain ATSA2]
MLDLDLDIGSRGSGETIRLEFPVDRYPATAAHIRDAIASGESRVCTIDRGGAEENRDDSLRGIPTKKGFDRDEWPMAMCE
EGGTGADIEYVEPSDNRGAGSWVGHALDDYPDGTQVEFILN

Nucleotide


Download         Length: 366 bp        

>NTDB_id=370630 FFV09_RS02615 WP_281288490.1 663953..664318(+) (nucA/comI) [Saccharibacillus brassicae strain ATSA2]
CTGCTCGATCTGGACCTCGATATCGGAAGCCGCGGCAGCGGCGAGACGATTCGCCTCGAATTTCCCGTCGACCGCTATCC
CGCCACGGCCGCGCATATCCGGGACGCGATCGCAAGCGGCGAATCCCGCGTCTGCACGATCGACCGCGGCGGCGCCGAGG
AGAACCGCGACGACTCGCTGCGCGGCATCCCGACCAAAAAAGGCTTCGATCGCGACGAATGGCCGATGGCGATGTGCGAA
GAAGGCGGCACGGGCGCGGACATCGAATATGTCGAACCGTCCGACAACCGCGGAGCCGGTTCCTGGGTCGGCCACGCGCT
GGACGATTACCCGGACGGCACGCAGGTCGAGTTCATTCTCAACTGA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(25-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.961

85.124

0.579

Multiple sequence alignment