Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   G3T45_RS06130 Genome accession   NZ_CP048764
Coordinates   1158257..1159123 (-) Length   288 a.a.
NCBI ID   WP_002852840.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZH003     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1153257..1164123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T45_RS06105 (G3T45_06105) gpsA 1153557..1154453 (-) 897 WP_002859277.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  G3T45_RS06110 (G3T45_06110) gatB 1154450..1155868 (-) 1419 WP_052817150.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  G3T45_RS08900 - 1155986..1156171 (-) 186 WP_052779690.1 hypothetical protein -
  G3T45_RS06120 (G3T45_06115) atpB 1156168..1156848 (-) 681 WP_052779689.1 F0F1 ATP synthase subunit A -
  G3T45_RS06125 (G3T45_06120) radA 1156917..1158257 (-) 1341 WP_167842852.1 DNA repair protein RadA Machinery gene
  G3T45_RS06130 (G3T45_06125) pilA 1158257..1159123 (-) 867 WP_002852840.1 signal recognition particle-docking protein FtsY Machinery gene
  G3T45_RS06135 (G3T45_06130) - 1159123..1159680 (-) 558 WP_052781690.1 TlpA disulfide reductase family protein -
  G3T45_RS06140 (G3T45_06135) - 1159763..1160389 (+) 627 WP_167843167.1 5-formyltetrahydrofolate cyclo-ligase -
  G3T45_RS06145 (G3T45_06140) rny 1160310..1161863 (+) 1554 WP_052793732.1 ribonuclease Y -
  G3T45_RS06150 (G3T45_06145) - 1161872..1162429 (+) 558 WP_052779687.1 DedA family protein -
  G3T45_RS06155 (G3T45_06150) - 1162429..1163688 (+) 1260 WP_052779686.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32036.03 Da        Isoelectric Point: 5.5179

>NTDB_id=370508 G3T45_RS06130 WP_002852840.1 1158257..1159123(-) (pilA) [Campylobacter jejuni strain ZH003]
MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=370508 G3T45_RS06130 WP_002852840.1 1158257..1159123(-) (pilA) [Campylobacter jejuni strain ZH003]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGGATTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CCCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAACTTGCTTATTTATA
TAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAACAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATCTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCCCATGAGCT
TGAAAAAATTGTGAGAATTTCAAACAAAGCTTTAGAAGGTGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTAGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.254

100

0.434