Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G3T45_RS05500 Genome accession   NZ_CP048764
Coordinates   1036437..1036988 (+) Length   183 a.a.
NCBI ID   WP_002921394.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZH003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1031437..1041988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T45_RS05465 (G3T45_05455) - 1031626..1032051 (+) 426 WP_032585143.1 GNAT family N-acetyltransferase -
  G3T45_RS05470 - 1032115..1032735 (+) 621 Protein_1060 NAD(P)H-dependent oxidoreductase -
  G3T45_RS05475 (G3T45_05470) - 1032735..1033340 (+) 606 WP_002867183.1 NAD(P)H-dependent oxidoreductase -
  G3T45_RS05480 (G3T45_05475) pgsA 1033466..1034002 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  G3T45_RS05485 (G3T45_05480) rseP 1033999..1035105 (+) 1107 WP_057095875.1 RIP metalloprotease RseP -
  G3T45_RS05490 (G3T45_05485) - 1035098..1035964 (+) 867 WP_057095876.1 VirK family antimicrobial peptide resistance protein -
  G3T45_RS05495 (G3T45_05490) rpsF 1036051..1036428 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  G3T45_RS05500 (G3T45_05495) ssb 1036437..1036988 (+) 552 WP_002921394.1 single-stranded DNA-binding protein Machinery gene
  G3T45_RS05505 (G3T45_05500) rpsR 1036999..1037259 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  G3T45_RS05510 (G3T45_05505) lon 1037320..1039695 (-) 2376 WP_002852988.1 endopeptidase La -
  G3T45_RS05515 (G3T45_05510) - 1039712..1040359 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  G3T45_RS05520 (G3T45_05515) fliW 1040520..1040909 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  G3T45_RS05525 (G3T45_05520) proC 1040909..1041643 (+) 735 WP_032582987.1 pyrroline-5-carboxylate reductase Machinery gene
  G3T45_RS05530 (G3T45_05525) ctsT 1041640..1041942 (+) 303 WP_032582988.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20740.63 Da        Isoelectric Point: 5.0431

>NTDB_id=370500 G3T45_RS05500 WP_002921394.1 1036437..1036988(+) (ssb) [Campylobacter jejuni strain ZH003]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=370500 G3T45_RS05500 WP_002921394.1 1036437..1036988(+) (ssb) [Campylobacter jejuni strain ZH003]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393

Multiple sequence alignment