Detailed information NTG0370466

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FKM99_RS23180
• Genome accession: NZ_CP041202
• Coordinates: 2876524..2877513 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain Vb0624
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2871524..2882513

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FKM99_RS23165 (FKM99_23165)	recA	2872072..2873115 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
FKM99_RS23170 (FKM99_23170)	pncC	2873316..2873798 (-)	483	WP_017449151.1	nicotinamide-nucleotide amidase	-
FKM99_RS23175 (FKM99_23175)	mutS	2873883..2876444 (+)	2562	WP_141180415.1	DNA mismatch repair protein MutS	-
FKM99_RS23180 (FKM99_23180)	rpoS	2876524..2877513 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
FKM99_RS23185 (FKM99_23185)	-	2877594..2878517 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
FKM99_RS23190 (FKM99_23190)	-	2878532..2879158 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FKM99_RS23195 (FKM99_23195)	surE	2879158..2879934 (-)	777	WP_140166594.1	5'/3'-nucleotidase SurE	-
FKM99_RS23200 (FKM99_23200)	truD	2879934..2880977 (-)	1044	WP_140166593.1	tRNA pseudouridine(13) synthase TruD	-
FKM99_RS23205 (FKM99_23205)	ispF	2881024..2881500 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FKM99_RS23210 (FKM99_23210)	ispD	2881518..2882222 (-)	705	WP_047734140.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FKM99_RS23215 (FKM99_23215)	ftsB	2882224..2882505 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=370466 FKM99_RS23180 WP_005478537.1 2876524..2877513(-) (rpoS) [Vibrio parahaemolyticus strain Vb0624]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=370466 FKM99_RS23180 WP_005478537.1 2876524..2877513(-) (rpoS) [Vibrio parahaemolyticus strain Vb0624]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851