Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FKM99_RS19175 Genome accession   NZ_CP041202
Coordinates   2011824..2013245 (+) Length   473 a.a.
NCBI ID   WP_141180225.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Vb0624     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2006824..2018245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKM99_RS19155 (FKM99_19155) - 2006884..2007636 (-) 753 WP_069503416.1 adenosylcobinamide-GDP ribazoletransferase -
  FKM99_RS19160 (FKM99_19160) cobT 2007681..2008724 (-) 1044 WP_141180222.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  FKM99_RS19165 (FKM99_19165) - 2009407..2010102 (+) 696 WP_141180223.1 NAD(P)H-binding protein -
  FKM99_RS19170 (FKM99_19170) - 2010295..2011668 (+) 1374 WP_141180224.1 L-cystine transporter -
  FKM99_RS19175 (FKM99_19175) sbcB 2011824..2013245 (+) 1422 WP_141180225.1 exodeoxyribonuclease I Machinery gene
  FKM99_RS19180 (FKM99_19180) - 2013301..2013675 (+) 375 WP_005455074.1 CidA/LrgA family protein -
  FKM99_RS19185 (FKM99_19185) - 2013677..2014354 (+) 678 WP_005454891.1 LrgB family protein -
  FKM99_RS19190 (FKM99_19190) cdd 2014719..2015606 (+) 888 WP_015296604.1 cytidine deaminase -
  FKM99_RS19195 (FKM99_19195) purT 2015754..2016929 (+) 1176 WP_023584297.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  FKM99_RS19200 (FKM99_19200) - 2017031..2017681 (-) 651 WP_005480776.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54629.98 Da        Isoelectric Point: 4.9813

>NTDB_id=370449 FKM99_RS19175 WP_141180225.1 2011824..2013245(+) (sbcB) [Vibrio parahaemolyticus strain Vb0624]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKIKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=370449 FKM99_RS19175 WP_141180225.1 2011824..2013245(+) (sbcB) [Vibrio parahaemolyticus strain Vb0624]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGTCTATCCGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACTAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTACCGCAACTTTATCGATCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCAGACGTTATCGC
AACGATTGAGATGGCAAAGAAAATCAAAGCCGCACAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCACAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797

Multiple sequence alignment