Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   FKM99_RS05215 Genome accession   NZ_CP041201
Coordinates   1121198..1122379 (+) Length   393 a.a.
NCBI ID   WP_141179514.1    Uniprot ID   A0A7Y0SQ23
Organism   Vibrio parahaemolyticus strain Vb0624     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1116198..1127379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKM99_RS05200 (FKM99_05200) - 1116459..1118693 (+) 2235 WP_153645866.1 M9 family metallopeptidase -
  FKM99_RS05205 (FKM99_05205) - 1118873..1119610 (+) 738 WP_025507992.1 EAL domain-containing protein -
  FKM99_RS05210 (FKM99_05210) ylqF 1119899..1120843 (+) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  FKM99_RS05215 (FKM99_05215) cqsA 1121198..1122379 (+) 1182 WP_141179514.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  FKM99_RS05220 (FKM99_05220) cqsS 1122457..1124505 (-) 2049 WP_024701329.1 response regulator Regulator
  FKM99_RS05225 (FKM99_05225) - 1124825..1125442 (+) 618 WP_005481262.1 HAD family phosphatase -
  FKM99_RS05230 (FKM99_05230) - 1125529..1126077 (-) 549 WP_015313129.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43765.12 Da        Isoelectric Point: 6.7295

>NTDB_id=370438 FKM99_RS05215 WP_141179514.1 1121198..1122379(+) (cqsA) [Vibrio parahaemolyticus strain Vb0624]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRNFLEERGVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=370438 FKM99_RS05215 WP_141179514.1 1121198..1122379(+) (cqsA) [Vibrio parahaemolyticus strain Vb0624]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGACGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAACCGGCCTTTGAGCACCAGCTGGCGACGTTTGTCGGTATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCTCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTTGATTGTGGCTTAGTCGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAAAGGGGTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATATTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTGGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGAAACTTTCTTGAAGAAAGAGGCGTTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y0SQ23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.656

98.473

0.578

Multiple sequence alignment