Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Wei3612_RS04750 Genome accession   NZ_CP041193
Coordinates   1008648..1010021 (-) Length   457 a.a.
NCBI ID   WP_010372293.1    Uniprot ID   A0A0D1KBD6
Organism   Weissella cibaria strain CBA3612     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1003648..1015021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Wei3612_RS04740 (Wei3612_04740) gltX 1005953..1007449 (-) 1497 WP_043710669.1 glutamate--tRNA ligase -
  Wei3612_RS04745 (Wei3612_04745) - 1007529..1008632 (-) 1104 WP_029237460.1 PIN/TRAM domain-containing protein -
  Wei3612_RS04750 (Wei3612_04750) radA 1008648..1010021 (-) 1374 WP_010372293.1 DNA repair protein RadA Machinery gene
  Wei3612_RS04755 (Wei3612_04755) - 1010036..1010578 (-) 543 WP_141146635.1 dUTP diphosphatase -
  Wei3612_RS04760 (Wei3612_04760) - 1010674..1010952 (-) 279 WP_010372287.1 GNAT family N-acetyltransferase -
  Wei3612_RS04765 (Wei3612_04765) - 1010996..1011538 (-) 543 WP_063083693.1 NlpC/P60 family protein -
  Wei3612_RS04770 (Wei3612_04770) - 1011599..1012489 (-) 891 WP_063083695.1 LysM peptidoglycan-binding domain-containing protein -
  Wei3612_RS04775 (Wei3612_04775) - 1012889..1013896 (-) 1008 WP_063083696.1 zinc-binding alcohol dehydrogenase family protein -
  Wei3612_RS04780 (Wei3612_04780) budA 1013982..1014701 (-) 720 WP_010372273.1 acetolactate decarboxylase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49224.36 Da        Isoelectric Point: 5.3902

>NTDB_id=370418 Wei3612_RS04750 WP_010372293.1 1008648..1010021(-) (radA) [Weissella cibaria strain CBA3612]
MAKTKTQFVCSNCGYVSQRYMGRCSNCGAWGTFVEEVIQPEKADRKSRVNLAGQIAKVERLGQVSIEETPRVDTQIDEFN
RVLGGGIVPGSMVLIGGDPGIGKSTLLLQVSSQLANSGGTILYVAGEESASQIKLRAERLGVRGDADFFLYPETDMSQIR
KAIDETKPDYVIIDSIQTMQQPDVSSAVGSVAQIRETTAELLQIAKTNGITIFIVGHVTKDGAIAGPKILEHMVDTVLYF
EGDNQRSFRLLRAVKNRFGSTNELGVFEMNEGGLAEVTNPSGLFLEDRLSDASGSAVVVAMEGSRPILVEVQALVTPTVF
GNAQRTAAGIDRNRISLLMAVLEKRANLLLQNQDAYVRAAGGVKLDEPAIDLAVAVAIASSYRDKGTRATDAFVGEIGLT
GEIRRVPNVVDRILEAKKLGFKRVFVPQHSVDTMKDIPGIQIIGVATLADALRLALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=370418 Wei3612_RS04750 WP_010372293.1 1008648..1010021(-) (radA) [Weissella cibaria strain CBA3612]
ATGGCAAAAACAAAAACCCAGTTTGTATGTTCTAACTGTGGGTATGTTTCACAACGTTACATGGGACGTTGCTCTAACTG
TGGTGCCTGGGGAACGTTCGTTGAAGAAGTTATTCAACCAGAAAAGGCGGACCGAAAGTCACGCGTTAACCTGGCTGGAC
AAATTGCGAAGGTTGAGCGATTAGGCCAAGTTAGCATCGAGGAGACGCCACGTGTCGATACGCAAATTGATGAATTTAAC
CGGGTACTTGGTGGCGGAATCGTACCTGGGTCAATGGTTTTGATCGGTGGTGACCCAGGGATTGGAAAGTCAACGTTGCT
ACTTCAGGTATCAAGTCAGTTGGCAAATTCAGGCGGAACGATTTTGTACGTCGCTGGAGAAGAAAGTGCTTCACAGATTA
AGTTGCGAGCAGAACGCTTGGGAGTTCGTGGCGATGCGGATTTCTTCTTGTACCCAGAAACGGACATGAGCCAAATTCGT
AAGGCAATCGATGAAACAAAGCCGGATTATGTCATTATCGACTCAATCCAAACCATGCAACAACCAGATGTTTCATCAGC
GGTTGGATCAGTTGCACAAATTCGTGAGACGACCGCCGAATTGCTCCAAATCGCGAAGACAAACGGGATTACAATTTTTA
TTGTTGGTCACGTAACCAAGGATGGTGCCATCGCTGGACCGAAGATTTTGGAACACATGGTGGATACGGTACTTTACTTT
GAGGGTGATAATCAGCGTAGTTTCCGGTTGCTACGAGCTGTTAAGAATCGATTCGGTTCAACAAATGAGTTAGGGGTCTT
TGAAATGAACGAGGGTGGTTTGGCAGAAGTGACGAACCCATCTGGTTTATTCTTGGAAGACCGTCTCTCAGACGCCAGTG
GTTCGGCAGTGGTCGTTGCGATGGAAGGCTCTCGACCAATTTTGGTTGAAGTCCAGGCGTTGGTGACACCAACCGTCTTT
GGTAATGCCCAACGCACAGCAGCCGGCATTGATCGCAATCGTATTTCACTGTTGATGGCTGTCTTAGAAAAGCGTGCAAA
CTTGTTGTTGCAGAACCAGGATGCCTATGTGCGCGCTGCAGGTGGTGTAAAGCTAGATGAACCAGCAATCGACTTGGCCG
TTGCCGTTGCAATTGCTTCGAGTTACCGGGATAAGGGAACTCGGGCAACTGACGCGTTTGTCGGTGAAATTGGGTTGACT
GGTGAAATCCGGCGGGTGCCAAATGTGGTTGATCGCATTCTTGAAGCGAAAAAACTTGGTTTCAAACGAGTATTTGTGCC
ACAGCATTCAGTTGATACAATGAAAGATATACCGGGCATTCAAATTATCGGTGTGGCCACATTGGCAGATGCTTTACGGT
TGGCATTAGATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KBD6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

63.576

99.125

0.63
  radA Streptococcus mitis SK321

63.576

99.125

0.63
  radA Streptococcus pneumoniae Rx1

63.576

99.125

0.63
  radA Streptococcus pneumoniae D39

63.576

99.125

0.63
  radA Streptococcus pneumoniae R6

63.576

99.125

0.63
  radA Streptococcus pneumoniae TIGR4

63.576

99.125

0.63
  radA Bacillus subtilis subsp. subtilis str. 168

59.737

100

0.597

Multiple sequence alignment