Detailed information NTG0370362

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: BvL003_RS07990
• Genome accession: NZ_CP041192
• Coordinates: 1591490..1592269 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain BvL03
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1586490..1597269

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BvL003_RS07970 (BvL003_08090)	trmFO	1587177..1588484 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
BvL003_RS07975 (BvL003_08095)	xerC	1588554..1589471 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
BvL003_RS07980 (BvL003_08100)	hslV	1589487..1590032 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
BvL003_RS07985 (BvL003_08105)	hslU	1590049..1591452 (+)	1404	WP_014305002.1	HslU--HslV peptidase ATPase subunit	-
BvL003_RS07990 (BvL003_08110)	codY	1591490..1592269 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
BvL003_RS07995 (BvL003_08115)	flgB	1592623..1593012 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
BvL003_RS08000 (BvL003_08120)	flgC	1593012..1593464 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
BvL003_RS08005 (BvL003_08125)	fliE	1593475..1593795 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
BvL003_RS08010 (BvL003_08130)	fliF	1593838..1595448 (+)	1611	WP_003154257.1	flagellar basal-body MS-ring/collar protein FliF	-
BvL003_RS08015 (BvL003_08135)	fliG	1595461..1596477 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
BvL003_RS08020 (BvL003_08140)	fliH	1596470..1597225 (+)	756	WP_146276768.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=370362 BvL003_RS07990 WP_003154263.1 1591490..1592269(+) (codY) [Bacillus velezensis strain BvL03]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=370362 BvL003_RS07990 WP_003154263.1 1591490..1592269(+) (codY) [Bacillus velezensis strain BvL03]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471