Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BvL003_RS07960 Genome accession   NZ_CP041192
Coordinates   1583956..1584855 (+) Length   299 a.a.
NCBI ID   WP_146276764.1    Uniprot ID   -
Organism   Bacillus velezensis strain BvL03     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1578956..1589855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BvL003_RS07940 (BvL003_08060) - 1579647..1581350 (+) 1704 WP_146276762.1 glycosyl transferase -
  BvL003_RS07945 (BvL003_08065) - 1581347..1581628 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  BvL003_RS07950 (BvL003_08070) sucC 1581803..1582960 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  BvL003_RS07955 (BvL003_08075) sucD 1582989..1583891 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  BvL003_RS07960 (BvL003_08080) dprA 1583956..1584855 (+) 900 WP_146276764.1 DNA-processing protein DprA Machinery gene
  BvL003_RS07965 (BvL003_08085) topA 1585037..1587112 (+) 2076 WP_025649465.1 type I DNA topoisomerase -
  BvL003_RS07970 (BvL003_08090) trmFO 1587177..1588484 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BvL003_RS07975 (BvL003_08095) xerC 1588554..1589471 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32924.00 Da        Isoelectric Point: 7.8286

>NTDB_id=370361 BvL003_RS07960 WP_146276764.1 1583956..1584855(+) (dprA) [Bacillus velezensis strain BvL03]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTASEEIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPRWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=370361 BvL003_RS07960 WP_146276764.1 1583956..1584855(+) (dprA) [Bacillus velezensis strain BvL03]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCTCGGAAGAAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTACCCAAGATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTACAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCAGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.234

100

0.702

Multiple sequence alignment