Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   G3T49_RS02315 Genome accession   NZ_CP048756
Coordinates   446630..447970 (-) Length   446 a.a.
NCBI ID   WP_167842852.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 441630..452970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T49_RS02290 (G3T49_02280) - 442082..443260 (-) 1179 WP_167843166.1 metal-dependent hydrolase -
  G3T49_RS02295 (G3T49_02285) gpsA 443270..444166 (-) 897 WP_002859277.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  G3T49_RS02300 (G3T49_02290) gatB 444163..445581 (-) 1419 WP_052817150.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  G3T49_RS08760 - 445699..445884 (-) 186 WP_052779690.1 hypothetical protein -
  G3T49_RS02310 (G3T49_02295) atpB 445881..446561 (-) 681 WP_052779689.1 F0F1 ATP synthase subunit A -
  G3T49_RS02315 (G3T49_02300) radA 446630..447970 (-) 1341 WP_167842852.1 DNA repair protein RadA Machinery gene
  G3T49_RS02320 (G3T49_02305) pilA 447970..448836 (-) 867 WP_002852840.1 signal recognition particle-docking protein FtsY Machinery gene
  G3T49_RS02325 (G3T49_02310) - 448836..449393 (-) 558 WP_052781690.1 TlpA disulfide reductase family protein -
  G3T49_RS02330 (G3T49_02315) - 449476..450102 (+) 627 WP_167843167.1 5-formyltetrahydrofolate cyclo-ligase -
  G3T49_RS02335 (G3T49_02320) rny 450023..451576 (+) 1554 WP_052793732.1 ribonuclease Y -
  G3T49_RS02340 (G3T49_02325) - 451585..452142 (+) 558 WP_052779687.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49054.94 Da        Isoelectric Point: 6.9288

>NTDB_id=370309 G3T49_RS02315 WP_167842852.1 446630..447970(-) (radA) [Campylobacter jejuni strain ZS006]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFIELKAEQIKVLKELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKTQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIVDSIQTLYSNKVTSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=370309 G3T49_RS02315 WP_167842852.1 446630..447970(-) (radA) [Campylobacter jejuni strain ZS006]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTATAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGTATGAAAA
CAAGTGAAGCTGTTTGTATTGAAGATGTGGAATTAGAACATTTTACAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGCGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTGTT
AAAAATTGCTTCAAATTTAGCTAAACAGGGTAAAAAAGTGCTTTATGTCAGTGGCGAAGAAAGTAAAACCCAGATTAAAT
TAAGAGCTGATCGTCTTGAGGCTAATACTCCGAATTTATTTTTGCTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTGCACAAAAAAGATTATAGTATTCTTATCGTTGACTCTATACAAACTCTATATTCAAATAAAGTCACTTCAGCAGCAGG
AAGCATCACTCAGGTGCGTGAGATTACTTTCGAACTTATGCGTGTTAGCAAAGCTTATAATATCAGTACTTTTATCATAG
GGCACATTACTAAAGAAGGTGCTATAGCAGGACCTAGAGTTCTTGAACATATGGTGGATGTGGTGCTTTATTTTGAAGGA
GATGCTACTAAAGAAATCAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACAAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATTAGCGCAAAAGATTTGGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTGATGGAAGGATCTCGTGCCTTGGTTTTAGAAGTTCAAGCTTTAGTGTGTGAAAGTTCTTATCCAAAACGC
AGCGCTACAGGATATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAGCTTGAAATTCCTTTAGGGCA
TTATGATGTATTTGTAAATATTAGCGGCGGAGTAAAAGTAAGTGAAACTGCTGCGGATTTGGCTGTGGTTGCTGCGATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGAGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCTATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGACTTAAGTGTTTTGTTGCTAAAGAACTTTCACAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

45.414

100

0.455
  radA Streptococcus pneumoniae Rx1

45.414

100

0.455
  radA Streptococcus pneumoniae D39

45.414

100

0.455
  radA Streptococcus pneumoniae TIGR4

45.414

100

0.455
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.437

97.534

0.453
  radA Streptococcus mitis SK321

45.393

99.776

0.453
  radA Streptococcus mitis NCTC 12261

45.393

99.776

0.453