Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FJQ89_RS20665 Genome accession   NZ_CP041185
Coordinates   4709819..4711297 (+) Length   492 a.a.
NCBI ID   WP_141171518.1    Uniprot ID   A0A4Y6RI03
Organism   Janthinobacterium tructae strain SNU WT1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4704819..4716297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJQ89_RS20640 (FJQ89_20640) - 4706270..4707280 (+) 1011 WP_099760892.1 KpsF/GutQ family sugar-phosphate isomerase -
  FJQ89_RS20645 (FJQ89_20645) - 4707280..4707813 (+) 534 WP_141171517.1 HAD hydrolase family protein -
  FJQ89_RS20650 (FJQ89_20650) lptC 4707859..4708470 (+) 612 WP_243136159.1 LPS export ABC transporter periplasmic protein LptC -
  FJQ89_RS20655 (FJQ89_20655) lptA 4708496..4709059 (+) 564 WP_099760889.1 lipopolysaccharide transport periplasmic protein LptA -
  FJQ89_RS20660 (FJQ89_20660) lptB 4709059..4709814 (+) 756 WP_071079722.1 LPS export ABC transporter ATP-binding protein -
  FJQ89_RS20665 (FJQ89_20665) rpoN/rpoN1 4709819..4711297 (+) 1479 WP_141171518.1 RNA polymerase factor sigma-54 Machinery gene
  FJQ89_RS20670 (FJQ89_20670) raiA 4711367..4711729 (+) 363 WP_141171519.1 ribosome-associated translation inhibitor RaiA -
  FJQ89_RS20675 (FJQ89_20675) - 4711864..4712949 (+) 1086 WP_141171520.1 enoyl-CoA hydratase/isomerase family protein -
  FJQ89_RS20680 (FJQ89_20680) rapZ 4712950..4713813 (-) 864 WP_141171521.1 RNase adapter RapZ -
  FJQ89_RS20685 (FJQ89_20685) hprK 4713962..4714897 (-) 936 WP_034753337.1 HPr(Ser) kinase/phosphatase -
  FJQ89_RS20690 (FJQ89_20690) - 4714934..4715416 (-) 483 WP_096233534.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54476.11 Da        Isoelectric Point: 5.1021

>NTDB_id=370278 FJQ89_RS20665 WP_141171518.1 4709819..4711297(+) (rpoN/rpoN1) [Janthinobacterium tructae strain SNU WT1]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQLLTDNPLLERLDDPLDHSLRLLSDGALSSTAAPAEAPPQPP
GQDAPAAPAEAEAFDGEAGDGPAAADGGDSDWSEASRGKAPDDEDSRPQLEAHHCTLREHLMEQMRVTVLELRDRALVEL
IIDALDDNGYLEESLDDILARLPEELEIDADEMRTALSLLQSFDPPGVGARNASECLALQIKRLPHVAMVTRRMALVIVE
KHLAWFAQRDFNKLKKALDCDEEDLREAQTVIRQCNPHPGAVFASDVSDYVVPDVVVKRARNGWQVTLNNDVMPRLRVNA
MYANLLKQGKGEGAMGAQLQEAKWLIKNMRQRFDTILRVAQAIVERQKNFFSHGAVAMRPLVLREIADTLGLHESTISRV
TTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIVQLTGAEDPKNPLSDSKIADMLGEQGMVIARRTVAKYREA
LKIPPVSLRKCL

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=370278 FJQ89_RS20665 WP_141171518.1 4709819..4711297(+) (rpoN/rpoN1) [Janthinobacterium tructae strain SNU WT1]
ATGAAACAATCATTGCAGCTGCGCACTTCGCAGCACCTGGCACTGACGCCGCAGTTGCAGCAATCGATACGCCTGTTGCA
ATTGTCTACCCTGGAATTGCACCAGGAACTAGAGCAACTGCTGACGGACAATCCCTTGCTCGAGCGCCTCGACGATCCGC
TCGATCATTCGCTGCGCCTGCTGTCCGACGGGGCCCTGAGTTCCACGGCCGCGCCGGCCGAAGCGCCGCCCCAGCCGCCA
GGCCAGGATGCGCCTGCGGCGCCGGCCGAAGCAGAAGCCTTTGATGGCGAGGCGGGCGACGGCCCGGCCGCCGCGGACGG
CGGCGACAGCGACTGGAGCGAGGCGAGCCGGGGCAAGGCGCCCGACGACGAAGATTCCCGTCCGCAATTGGAAGCCCATC
ACTGCACCCTGCGCGAGCACCTGATGGAGCAGATGCGCGTGACGGTGCTCGAGTTGCGCGACCGCGCGCTGGTCGAGCTG
ATCATCGACGCGCTCGACGACAATGGCTACCTGGAAGAGTCACTCGACGACATCCTGGCGCGCCTGCCGGAAGAGCTGGA
AATCGACGCCGACGAGATGCGCACGGCCTTGTCCCTGTTGCAAAGTTTCGATCCGCCCGGCGTGGGTGCGCGCAATGCAT
CCGAATGCCTGGCGCTGCAAATCAAGCGTTTGCCGCACGTCGCCATGGTGACGCGGCGCATGGCCCTCGTCATCGTGGAA
AAGCACCTGGCCTGGTTTGCCCAGCGCGATTTCAACAAGCTGAAAAAAGCCCTCGATTGCGACGAGGAAGACTTGCGCGA
AGCGCAGACGGTGATTCGCCAGTGCAATCCGCATCCGGGCGCCGTGTTCGCCTCGGACGTGTCCGATTACGTGGTGCCCG
ACGTCGTCGTCAAGCGCGCGCGCAATGGCTGGCAAGTCACCCTGAACAACGACGTCATGCCGCGCCTGCGCGTCAACGCC
ATGTACGCCAACTTGCTCAAGCAGGGCAAGGGCGAGGGCGCCATGGGCGCACAGTTGCAGGAAGCCAAGTGGCTGATCAA
GAATATGCGCCAGCGCTTTGACACGATCCTGCGCGTGGCGCAAGCGATAGTAGAAAGACAAAAGAACTTTTTCTCGCATG
GGGCCGTTGCCATGCGCCCCCTTGTGCTCCGTGAAATAGCTGATACACTGGGTTTACACGAGAGTACTATCTCGCGGGTA
ACAACTCAAAAGTACATGCTGACCCCGCACGGCATGTTCGAGTTGAAATATTTCTTTGGTAGCCACGTCGCCACCGAAGC
GGGGGGCGAAGCATCATCGACGGCGATACGGGCATTGATCGTGCAACTGACAGGAGCAGAAGACCCTAAAAATCCTTTAT
CCGACAGTAAGATTGCGGACATGCTGGGGGAACAAGGCATGGTGATTGCGCGACGTACTGTTGCCAAATACCGGGAAGCG
TTGAAAATTCCGCCAGTGAGCCTGCGTAAGTGTTTGTAA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-490)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(131-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y6RI03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

60.714

100

0.622

Multiple sequence alignment