Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FJQ89_RS10120 Genome accession   NZ_CP041185
Coordinates   2313725..2315101 (-) Length   458 a.a.
NCBI ID   WP_141170089.1    Uniprot ID   A0A4Y6RCJ0
Organism   Janthinobacterium tructae strain SNU WT1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2308725..2320101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJQ89_RS10095 (FJQ89_10095) rraA 2308864..2309358 (-) 495 WP_141170085.1 ribonuclease E activity regulator RraA -
  FJQ89_RS10100 (FJQ89_10100) - 2309391..2310614 (-) 1224 WP_243136501.1 MFS transporter -
  FJQ89_RS10105 (FJQ89_10105) - 2310742..2311542 (+) 801 WP_168208432.1 helix-turn-helix transcriptional regulator -
  FJQ89_RS10110 (FJQ89_10110) fliD 2311655..2313040 (-) 1386 WP_141170087.1 flagellar filament capping protein FliD -
  FJQ89_RS10115 (FJQ89_10115) - 2313273..2313542 (-) 270 WP_141170088.1 PilZ domain-containing protein -
  FJQ89_RS10120 (FJQ89_10120) radA 2313725..2315101 (-) 1377 WP_141170089.1 DNA repair protein RadA Machinery gene
  FJQ89_RS10125 (FJQ89_10125) alr 2315176..2316255 (-) 1080 WP_141170090.1 alanine racemase -
  FJQ89_RS10130 (FJQ89_10130) lplT 2316503..2317765 (+) 1263 WP_141170091.1 lysophospholipid transporter LplT -
  FJQ89_RS10135 (FJQ89_10135) - 2317826..2318764 (-) 939 WP_243136502.1 DUF1853 family protein -
  FJQ89_RS10140 (FJQ89_10140) - 2318757..2319635 (-) 879 WP_141170093.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48975.57 Da        Isoelectric Point: 7.2144

>NTDB_id=370268 FJQ89_RS10120 WP_141170089.1 2313725..2315101(-) (radA) [Janthinobacterium tructae strain SNU WT1]
MAKVKTIYTCSDCGAISNKWMGQCTSCNQWNTMVETLPETGGNNRYSNPQHMSLAQTAPVLSLDDIDAIDVPRFGTGIEE
FDRVLGGGMVAGGVVLIGGDPGIGKSTLLLQALANMSHHKRVLYVSGEESGAQIALRAKRLLIDAKELKLQAEIQLEKIL
GTLADLKPEVVVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRAAKQTGVTIILVGHVTKEGALAGPRVLEHIVDTVLYF
EGDAHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDTSHL
PNARRLSVGLEQNRLAMLLAVAHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLA
GEIRPAPRGQERLREAAKLGFTLAVVPKSNLPKQAIEGLKVIGVERIDEAFNKLRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=370268 FJQ89_RS10120 WP_141170089.1 2313725..2315101(-) (radA) [Janthinobacterium tructae strain SNU WT1]
ATGGCAAAAGTCAAGACCATCTATACCTGCAGCGATTGCGGCGCCATCAGTAATAAATGGATGGGGCAATGTACCTCGTG
CAACCAGTGGAACACCATGGTGGAAACACTGCCCGAAACGGGCGGCAACAACCGCTATTCGAACCCGCAGCACATGTCGC
TGGCGCAGACGGCGCCCGTGCTGTCGCTCGACGATATCGATGCCATCGACGTGCCCCGCTTCGGCACGGGCATCGAAGAA
TTCGACCGCGTGCTGGGCGGCGGCATGGTGGCGGGCGGCGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGAC
CCTGCTGCTGCAGGCGCTGGCCAACATGTCGCACCACAAGCGCGTGCTGTATGTCAGTGGTGAAGAGTCCGGCGCGCAGA
TCGCCCTGCGGGCCAAGCGTCTCCTCATCGATGCCAAGGAACTCAAATTGCAGGCCGAGATCCAGCTGGAAAAAATCCTC
GGCACCCTGGCCGACCTGAAGCCGGAAGTGGTGGTGATCGATTCGATCCAGACCGTGTATTCGGACGCGCTCAGTTCGGC
GCCCGGTTCGGTGGCGCAAGTGCGCGAGTGCGCGGCGCAGCTGACGCGCGCGGCCAAGCAGACCGGCGTGACCATCATCC
TGGTGGGTCACGTGACGAAAGAGGGCGCGCTGGCCGGCCCCCGCGTGCTCGAACACATCGTCGACACGGTGCTGTATTTC
GAGGGCGACGCTCATTCCAGCTTCCGCCTGGTGCGCGCCATCAAGAACCGTTTCGGCGCCGTCAACGAACTGGGCGTGTT
CGCCATGACGGAAAAGGGGCTGAAAGGGGTGTCGAACCCGTCGGCGCTGTTCCTGTCGCAGCATGACAACCAGGTGCCCG
GTTCCTGCGTGATGGTGACGCAGGAAGGCACGCGTCCGCTGCTGGTGGAAATCCAGGCCCTGGTCGATACCAGCCACTTG
CCGAATGCGCGCCGCCTGTCTGTCGGCCTGGAGCAGAACCGCCTGGCCATGCTGCTGGCCGTGGCGCACCGCCACGCGGG
CATCGCCGCGTTTGACCAGGACGTGTTCATCAATGCCGTCGGCGGCGTCAAAATTACGGAACCGGCGGCCGACCTGGCCG
TGTTGTTGGCGATTAACTCGTCGATGCGCAACAAGCCCTTGCCGCGGGGACTCGTGGTGTTTGGCGAAGTGGGCCTGGCC
GGCGAAATCCGCCCTGCGCCAAGGGGCCAGGAACGCTTGCGCGAAGCGGCCAAGCTGGGCTTTACCCTGGCCGTGGTGCC
GAAGTCCAACCTGCCCAAGCAAGCGATCGAGGGTCTCAAGGTCATCGGCGTCGAGCGCATTGACGAAGCGTTTAACAAGT
TGCGCGATCTGGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-222)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(361-452)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y6RCJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.366

100

0.485
  radA Streptococcus pneumoniae Rx1

47.609

100

0.478
  radA Streptococcus pneumoniae D39

47.609

100

0.478
  radA Streptococcus pneumoniae R6

47.609

100

0.478
  radA Streptococcus pneumoniae TIGR4

47.609

100

0.478
  radA Streptococcus mitis NCTC 12261

47.609

100

0.478
  radA Streptococcus mitis SK321

47.712

100

0.478

Multiple sequence alignment