Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   G3273_RS08785 Genome accession   NZ_CP048647
Coordinates   1872803..1874230 (-) Length   475 a.a.
NCBI ID   WP_000980614.1    Uniprot ID   -
Organism   Escherichia coli strain GW-AmxH19     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1867803..1879230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3273_RS08755 (G3273_08755) yeeZ 1867858..1868682 (+) 825 WP_000754740.1 SDR family oxidoreductase -
  G3273_RS08760 (G3273_08760) yeeY 1868728..1869657 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  G3273_RS08765 (G3273_08765) yoeI 1869872..1869934 (+) 63 WP_010723108.1 membrane protein YoeI -
  G3273_RS08770 (G3273_08770) plaP 1869924..1871282 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  G3273_RS08775 (G3273_08775) tsuA 1871461..1872519 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  G3273_RS08780 (G3273_08780) tsuB 1872533..1872760 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  G3273_RS08785 (G3273_08785) sbcB 1872803..1874230 (-) 1428 WP_000980614.1 exodeoxyribonuclease I Machinery gene
  G3273_RS08790 (G3273_08790) dacD 1874438..1875604 (+) 1167 WP_001297905.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  G3273_RS08795 (G3273_08795) sbmC 1875723..1876196 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  G3273_RS08800 (G3273_08800) yeeA 1876394..1877452 (+) 1059 WP_001200894.1 FUSC family protein -
  G3273_RS08805 (G3273_08805) tmaR 1877624..1877953 (+) 330 WP_000450409.1 DUF496 family protein -
  G3273_RS25405 (G3273_08810) - 1878054..1878236 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  G3273_RS25120 - 1878356..1878436 (+) 81 WP_023441679.1 hypothetical protein -
  G3273_RS08820 (G3273_08820) - 1878725..1878805 (-) 81 Protein_1744 hypothetical protein -
  G3273_RS08825 (G3273_08825) yeeW 1878851..1879045 (-) 195 WP_000988601.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.74 Da        Isoelectric Point: 5.6054

>NTDB_id=370248 G3273_RS08785 WP_000980614.1 1872803..1874230(-) (sbcB) [Escherichia coli strain GW-AmxH19]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTARADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=370248 G3273_RS08785 WP_000980614.1 1872803..1874230(-) (sbcB) [Escherichia coli strain GW-AmxH19]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTACGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAGAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment