Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   G3273_RS04110 Genome accession   NZ_CP048647
Coordinates   853934..854410 (-) Length   158 a.a.
NCBI ID   WP_001536299.1    Uniprot ID   -
Organism   Escherichia coli strain GW-AmxH19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 848934..859410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3273_RS04075 (G3273_04075) kpsS 850534..851754 (+) 1221 WP_000794251.1 capsular biosynthesis protein Regulator
  G3273_RS04080 (G3273_04080) - 851780..852010 (-) 231 Protein_816 hypothetical protein -
  G3273_RS04085 (G3273_04085) - 852116..852292 (-) 177 WP_000839288.1 DUF957 domain-containing protein -
  G3273_RS04090 (G3273_04090) - 852309..852739 (-) 431 Protein_818 DUF5983 family protein -
  G3273_RS04095 (G3273_04095) cbtA 852736..853113 (-) 378 WP_000854811.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  G3273_RS04100 (G3273_04100) cbeA 853202..853570 (-) 369 WP_001285590.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  G3273_RS04105 (G3273_04105) - 853644..853865 (-) 222 WP_000692300.1 DUF987 domain-containing protein -
  G3273_RS04110 (G3273_04110) radC 853934..854410 (-) 477 WP_001536299.1 RadC family protein Machinery gene
  G3273_RS04115 (G3273_04115) - 854426..854911 (-) 486 WP_000214310.1 antirestriction protein -
  G3273_RS04120 (G3273_04120) - 855003..855821 (-) 819 WP_001234593.1 DUF932 domain-containing protein -
  G3273_RS04125 (G3273_04125) - 855939..856110 (-) 172 Protein_825 DUF905 family protein -
  G3273_RS04130 (G3273_04130) - 856211..856666 (-) 456 WP_000581502.1 IrmA family protein -
  G3273_RS04135 (G3273_04135) - 856742..859257 (-) 2516 Protein_827 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17674.39 Da        Isoelectric Point: 7.6149

>NTDB_id=370231 G3273_RS04110 WP_001536299.1 853934..854410(-) (radC) [Escherichia coli strain GW-AmxH19]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILKMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=370231 G3273_RS04110 WP_001536299.1 853934..854410(-) (radC) [Escherichia coli strain GW-AmxH19]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAAGATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTACTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCCGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGTCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399