Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FKO09_RS14455 Genome accession   NZ_CP041171
Coordinates   2876788..2877393 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Thompson strain SH11G0791     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2871788..2882393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKO09_RS14440 (FKO09_14440) helD 2872005..2874059 (-) 2055 WP_017465794.1 DNA helicase IV -
  FKO09_RS14445 (FKO09_14445) - 2874183..2874629 (+) 447 WP_001261222.1 YccF domain-containing protein -
  FKO09_RS14450 (FKO09_14450) yccS 2874648..2876801 (+) 2154 WP_000950861.1 YccS family putative transporter -
  FKO09_RS14455 (FKO09_14455) sxy/tfoX 2876788..2877393 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  FKO09_RS14460 (FKO09_14460) sulA 2877610..2878119 (+) 510 WP_017465793.1 SOS-induced cell division inhibitor SulA -
  FKO09_RS14465 (FKO09_14465) ompA 2878477..2879529 (+) 1053 WP_001674965.1 porin OmpA -
  FKO09_RS14470 (FKO09_14470) matP 2879601..2880053 (-) 453 WP_017465792.1 macrodomain Ter protein MatP -
  FKO09_RS14475 (FKO09_14475) - 2880239..2881999 (+) 1761 WP_017465791.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=370121 FKO09_RS14455 WP_001202375.1 2876788..2877393(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Thompson strain SH11G0791]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=370121 FKO09_RS14455 WP_001202375.1 2876788..2877393(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Thompson strain SH11G0791]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment