Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GCO85_RS13865 Genome accession   NZ_CP048618
Coordinates   3111291..3111884 (+) Length   197 a.a.
NCBI ID   WP_011216607.1    Uniprot ID   Q5WT52
Organism   Legionella pneumophila strain ERS1305867     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3106291..3116884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCO85_RS13855 (GCO85_13870) dnaX 3109240..3110910 (+) 1671 WP_061636765.1 DNA polymerase III subunit gamma/tau -
  GCO85_RS13860 (GCO85_13875) - 3110944..3111282 (+) 339 WP_011216606.1 YbaB/EbfC family nucleoid-associated protein -
  GCO85_RS13865 (GCO85_13880) recR 3111291..3111884 (+) 594 WP_011216607.1 recombination mediator RecR Machinery gene
  GCO85_RS13870 (GCO85_13885) - 3111877..3112737 (+) 861 WP_061636763.1 DUF547 domain-containing protein -
  GCO85_RS13875 (GCO85_13890) - 3112734..3114731 (+) 1998 WP_061636762.1 sulfatase-like hydrolase/transferase -
  GCO85_RS13880 (GCO85_13895) - 3114979..3116457 (-) 1479 WP_027226150.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21705.01 Da        Isoelectric Point: 6.6782

>NTDB_id=370120 GCO85_RS13865 WP_011216607.1 3111291..3111884(+) (recR) [Legionella pneumophila strain ERS1305867]
MDALSRLVEALRCLPGVGPKSAQRMVFHLLQHQRQRGLHLASCLEQAMKHISHCQQCNNYTEQTLCTLCQNPNRDSTLLC
VVESPADVSAIEQSNSFQGKYFVLMGKISPLDGLGPDDIGLPKLKELIIREKIQEVILALSPSVESQTTIHFIHQLLKDE
TVNISQLAHGIPSGGELEFLDGNTISSALKNRAVINV

Nucleotide


Download         Length: 594 bp        

>NTDB_id=370120 GCO85_RS13865 WP_011216607.1 3111291..3111884(+) (recR) [Legionella pneumophila strain ERS1305867]
ATGGATGCTCTAAGCCGCTTGGTAGAGGCGCTTCGCTGTCTTCCCGGTGTGGGACCAAAATCAGCACAAAGGATGGTGTT
CCATTTATTGCAGCACCAAAGACAGCGAGGTTTACACCTTGCCTCCTGTTTGGAACAGGCAATGAAGCACATTAGTCATT
GTCAGCAGTGTAATAATTACACCGAACAAACTCTGTGTACTCTTTGCCAAAACCCCAATCGAGATTCAACATTACTTTGC
GTGGTAGAGAGTCCAGCGGATGTTTCTGCCATAGAACAAAGCAATTCCTTTCAAGGTAAATATTTTGTCCTTATGGGAAA
AATTTCTCCTCTTGATGGTTTGGGACCTGATGACATAGGGCTACCGAAACTTAAGGAGTTAATTATTAGGGAAAAAATTC
AGGAAGTTATTCTTGCATTAAGCCCCAGTGTTGAAAGCCAGACCACAATTCATTTTATTCATCAGTTGCTAAAGGATGAA
ACTGTCAATATCAGTCAGTTAGCACATGGAATACCATCAGGTGGTGAATTAGAATTTTTAGATGGGAATACTATAAGCAG
TGCCCTTAAGAACAGAGCAGTGATTAATGTCTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-168)

RecR protein (RecR_ZnF)

(38-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5WT52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.513

98.985

0.401
  recR Bacillus subtilis subsp. subtilis str. 168

39.267

96.954

0.381