Detailed information NTG0370093

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GCO85_RS06580
• Genome accession: NZ_CP048618
• Coordinates: 1445022..1446047 (+)
• Length: 341 a.a.
• NCBI ID: WP_011946339.1
• Uniprot ID: -
• Organism: Legionella pneumophila strain ERS1305867
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1440022..1451047

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GCO85_RS06550 (GCO85_06560)	-	1440454..1440771 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
GCO85_RS06555 (GCO85_06565)	-	1440807..1441178 (+)	372	WP_011213591.1	protease inhibitor I42 family protein	-
GCO85_RS06560 (GCO85_06570)	-	1441235..1442950 (-)	1716	WP_061513441.1	NAD-dependent malic enzyme	-
GCO85_RS06565 (GCO85_06575)	-	1443030..1443413 (+)	384	WP_011946336.1	hypothetical protein	-
GCO85_RS06570 (GCO85_06580)	surE	1443416..1444174 (+)	759	WP_011213594.1	5'/3'-nucleotidase SurE	-
GCO85_RS06575 (GCO85_06585)	-	1444193..1444936 (+)	744	WP_027226692.1	peptidoglycan DD-metalloendopeptidase family protein	-
GCO85_RS06580 (GCO85_06590)	rpoS	1445022..1446047 (+)	1026	WP_011946339.1	RNA polymerase sigma factor RpoS	Regulator
GCO85_RS06585 (GCO85_06595)	hmgA	1446147..1447397 (-)	1251	WP_061636954.1	homogentisate 1,2-dioxygenase	-
GCO85_RS06590 (GCO85_06600)	-	1447544..1448287 (+)	744	WP_011213598.1	YebC/PmpR family DNA-binding transcriptional regulator	-
GCO85_RS06595 (GCO85_06605)	ruvC	1448287..1448811 (+)	525	WP_011213599.1	crossover junction endodeoxyribonuclease RuvC	-
GCO85_RS06600 (GCO85_06610)	ruvA	1448808..1449407 (+)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
GCO85_RS06605 (GCO85_06615)	-	1449457..1449777 (+)	321	WP_061636956.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39467.72 Da
• Isoelectric Point: 4.3705

>NTDB_id=370093 GCO85_RS06580 WP_011946339.1 1445022..1446047(+) (rpoS) [Legionella pneumophila strain ERS1305867]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDVEPDIEKMEEDLDEFPEFTDDEVFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=370093 GCO85_RS06580 WP_011946339.1 1445022..1446047(+) (rpoS) [Legionella pneumophila strain ERS1305867]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGATCTTGATGAATTTCCAGAGTTTACTGATGATGAAG
TTTTTCCTTCATTTCAGCGCGGGAAAAACATTGCTAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGCTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTGGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCAGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTGGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGTCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548