Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G3M66_RS05670 Genome accession   NZ_CP048609
Coordinates   1179127..1179642 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain STEFF_1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1174127..1184642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M66_RS05630 (G3M66_05570) csrA 1175145..1175330 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  G3M66_RS05655 (G3M66_05595) yqaB 1176357..1176923 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  G3M66_RS05660 (G3M66_05600) yqaA 1176920..1177348 (+) 429 WP_001287454.1 YqaA family protein -
  G3M66_RS05665 (G3M66_05605) gshA 1177421..1178977 (+) 1557 WP_000611781.1 glutamate--cysteine ligase -
  G3M66_RS05670 (G3M66_05610) luxS 1179127..1179642 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  G3M66_RS05675 (G3M66_05615) emrB 1179706..1181244 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  G3M66_RS05680 (G3M66_05620) emrA 1181261..1182433 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  G3M66_RS05685 (G3M66_05625) emrR 1182560..1183090 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  G3M66_RS05690 (G3M66_05635) ygaH 1183181..1183516 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  G3M66_RS05695 (G3M66_05640) ygaZ 1183506..1184243 (-) 738 WP_000445648.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=370022 G3M66_RS05670 WP_001130208.1 1179127..1179642(+) (luxS) [Escherichia coli strain STEFF_1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=370022 G3M66_RS05670 WP_001130208.1 1179127..1179642(+) (luxS) [Escherichia coli strain STEFF_1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment