Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G3M73_RS20195 Genome accession   NZ_CP048605
Coordinates   4308122..4308637 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain PapRG-06-5     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4303122..4313637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M73_RS20145 (G3M73_20145) csrA 4303431..4303616 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  G3M73_RS20180 (G3M73_20180) yqaB 4305352..4305918 (+) 567 WP_000273292.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  G3M73_RS20185 (G3M73_20185) yqaA 4305915..4306343 (+) 429 WP_001287464.1 YqaA family protein -
  G3M73_RS20190 (G3M73_20190) gshA 4306416..4307972 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  G3M73_RS20195 (G3M73_20195) luxS 4308122..4308637 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  G3M73_RS20200 (G3M73_20200) - 4308686..4309798 (-) 1113 WP_137566870.1 ATP-binding protein -
  G3M73_RS20205 (G3M73_20205) - 4309795..4310502 (-) 708 WP_163425462.1 RNA ligase family protein -
  G3M73_RS20210 (G3M73_20210) emrB 4310760..4312298 (-) 1539 WP_097512422.1 multidrug efflux MFS transporter permease subunit EmrB -
  G3M73_RS20215 (G3M73_20215) emrA 4312315..4313487 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=369988 G3M73_RS20195 WP_001130211.1 4308122..4308637(+) (luxS) [Escherichia coli strain PapRG-06-5]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=369988 G3M73_RS20195 WP_001130211.1 4308122..4308637(+) (luxS) [Escherichia coli strain PapRG-06-5]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731