Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   G3M72_RS08545 Genome accession   NZ_CP048604
Coordinates   1766360..1766965 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain PapRG-06-3     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1761360..1771965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M72_RS08525 (G3M72_08525) aes 1761397..1762356 (+) 960 WP_000801832.1 acetyl esterase -
  G3M72_RS08530 (G3M72_08530) hemH 1762353..1763315 (-) 963 WP_163388254.1 ferrochelatase -
  G3M72_RS08535 (G3M72_08535) adk 1763551..1764195 (-) 645 WP_001220233.1 adenylate kinase -
  G3M72_RS08540 (G3M72_08540) htpG 1764376..1766250 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  G3M72_RS08545 (G3M72_08545) recR 1766360..1766965 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  G3M72_RS08550 (G3M72_08550) ybaB 1766965..1767294 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  G3M72_RS08555 (G3M72_08555) dnaX 1767347..1769278 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  G3M72_RS08560 (G3M72_08560) apt 1769407..1769958 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  G3M72_RS08565 (G3M72_08565) ybaN 1770111..1770488 (-) 378 WP_001188905.1 DUF454 family protein -
  G3M72_RS08570 (G3M72_08570) priC 1770558..1771085 (+) 528 WP_001402074.1 primosomal replication protein N'' -
  G3M72_RS08575 (G3M72_08575) rsmS 1771099..1771260 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  G3M72_RS22715 - 1771313..1771411 (-) 99 Protein_1708 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=369861 G3M72_RS08545 WP_001195025.1 1766360..1766965(-) (recR) [Escherichia coli strain PapRG-06-3]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=369861 G3M72_RS08545 WP_001195025.1 1766360..1766965(-) (recR) [Escherichia coli strain PapRG-06-3]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443