Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   D073_RS10365 Genome accession   NZ_CP041145
Coordinates   2129737..2130345 (+) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus velezensis strain At1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2124737..2135345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D073_RS10325 (D073_1953) - 2125823..2126329 (-) 507 WP_012117833.1 PTS sugar transporter subunit IIA -
  D073_RS10330 (D073_1954) - 2126468..2126881 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  D073_RS10335 (D073_1955) - 2126911..2127312 (-) 402 WP_020955979.1 YppG family protein -
  D073_RS10340 (D073_1956) - 2127499..2127681 (+) 183 WP_003153532.1 YppF family protein -
  D073_RS10345 (D073_1957) - 2127720..2128088 (-) 369 WP_007409492.1 YppE family protein -
  D073_RS10350 (D073_1958) - 2128134..2128379 (-) 246 WP_007409491.1 DUF5446 family protein -
  D073_RS10355 sspM 2128585..2128689 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  D073_RS10360 (D073_1959) - 2128733..2129695 (-) 963 WP_020955980.1 DUF2515 domain-containing protein -
  D073_RS10365 (D073_1960) recU 2129737..2130345 (+) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  D073_RS10370 (D073_1961) - 2130384..2133167 (+) 2784 WP_020955981.1 PBP1A family penicillin-binding protein -
  D073_RS10375 (D073_1962) - 2133248..2133739 (-) 492 WP_020955982.1 YpoC family protein -
  D073_RS10380 (D073_1963) nth 2133736..2134395 (-) 660 WP_047935888.1 endonuclease III -
  D073_RS10385 (D073_1964) dnaD 2134414..2135112 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=369822 D073_RS10365 WP_012117837.1 2129737..2130345(+) (recU) [Bacillus velezensis strain At1]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=369822 D073_RS10365 WP_012117837.1 2129737..2130345(+) (recU) [Bacillus velezensis strain At1]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment