Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   D073_RS07310 Genome accession   NZ_CP041145
Coordinates   1385190..1385474 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain At1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1380190..1390474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D073_RS07285 (D073_1388) - 1381433..1382341 (+) 909 WP_020955756.1 ketopantoate reductase family protein -
  D073_RS07290 (D073_1389) - 1382373..1383605 (-) 1233 WP_007409644.1 aminopeptidase -
  D073_RS07295 - 1383706..1383840 (-) 135 WP_003154559.1 protein YkpC -
  D073_RS07300 (D073_1390) mreBH 1383912..1384919 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  D073_RS07310 (D073_1391) abrB 1385190..1385474 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  D073_RS07315 (D073_1392) - 1385647..1386951 (+) 1305 WP_007409646.1 ATP-binding protein -
  D073_RS07320 (D073_1393) - 1386953..1387780 (+) 828 WP_020955757.1 gamma-glutamylcyclotransferase -
  D073_RS07325 (D073_1394) ktrC 1387821..1388486 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  D073_RS07330 (D073_1395) ade 1388635..1390368 (+) 1734 WP_007409648.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=369816 D073_RS07310 WP_003154557.1 1385190..1385474(+) (abrB) [Bacillus velezensis strain At1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=369816 D073_RS07310 WP_003154557.1 1385190..1385474(+) (abrB) [Bacillus velezensis strain At1]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment