Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   G3M71_RS16390 Genome accession   NZ_CP048603
Coordinates   3409410..3410015 (-) Length   201 a.a.
NCBI ID   WP_001195024.1    Uniprot ID   -
Organism   Escherichia coli strain ChlosBP-23-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3404410..3415015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M71_RS16370 (G3M71_16370) aes 3404564..3405532 (+) 969 WP_000801820.1 acetyl esterase -
  G3M71_RS16375 (G3M71_16375) hemH 3405507..3406469 (-) 963 WP_001250114.1 ferrochelatase -
  G3M71_RS16380 (G3M71_16380) adk 3406601..3407245 (-) 645 WP_001313630.1 adenylate kinase -
  G3M71_RS16385 (G3M71_16385) htpG 3407426..3409300 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  G3M71_RS16390 (G3M71_16390) recR 3409410..3410015 (-) 606 WP_001195024.1 recombination mediator RecR Machinery gene
  G3M71_RS16395 (G3M71_16395) ybaB 3410015..3410344 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  G3M71_RS16400 (G3M71_16400) dnaX 3410397..3412328 (-) 1932 WP_000122025.1 DNA polymerase III subunit gamma/tau -
  G3M71_RS16405 (G3M71_16405) apt 3412457..3413008 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  G3M71_RS16410 (G3M71_16410) ybaN 3413161..3413538 (-) 378 WP_001188900.1 DUF454 family protein -
  G3M71_RS16415 (G3M71_16415) priC 3413608..3414135 (+) 528 WP_000844854.1 primosomal replication protein N'' -
  G3M71_RS16420 (G3M71_16420) rsmS 3414149..3414310 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  G3M71_RS23245 - 3414363..3414461 (-) 99 Protein_3250 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.04 Da        Isoelectric Point: 5.0822

>NTDB_id=369809 G3M71_RS16390 WP_001195024.1 3409410..3410015(-) (recR) [Escherichia coli strain ChlosBP-23-1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRKEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=369809 G3M71_RS16390 WP_001195024.1 3409410..3410015(-) (recR) [Escherichia coli strain ChlosBP-23-1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGCCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTAAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443