Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   D073_RS05360 Genome accession   NZ_CP041145
Coordinates   1027601..1028179 (+) Length   192 a.a.
NCBI ID   WP_020955599.1    Uniprot ID   -
Organism   Bacillus velezensis strain At1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1022601..1033179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D073_RS19830 - 1023102..1023617 (-) 516 WP_370529535.1 methyl-accepting chemotaxis protein -
  D073_RS19835 - 1023909..1024283 (-) 375 Protein_981 protoglobin domain-containing protein -
  D073_RS05345 (D073_1013) - 1024517..1026040 (-) 1524 WP_007409191.1 FAD-dependent oxidoreductase -
  D073_RS05350 (D073_1014) - 1026165..1027022 (+) 858 WP_140983754.1 SDR family oxidoreductase -
  D073_RS05355 (D073_1015) - 1027052..1027285 (-) 234 WP_007409189.1 IDEAL domain-containing protein -
  D073_RS05360 (D073_1016) comK 1027601..1028179 (+) 579 WP_020955599.1 competence protein ComK Regulator
  D073_RS05365 (D073_1017) - 1028325..1028693 (+) 369 WP_020955600.1 iron chaperone -
  D073_RS05370 (D073_1018) - 1028720..1029091 (+) 372 WP_140983755.1 iron chaperone -
  D073_RS05375 (D073_1019) - 1029139..1030350 (-) 1212 WP_007409185.1 GNAT family N-acetyltransferase -
  D073_RS05380 (D073_1020) - 1030507..1031217 (-) 711 WP_020955602.1 YrpD family protein -
  D073_RS05385 (D073_1021) - 1031413..1031682 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  D073_RS05390 (D073_1022) - 1031715..1032032 (-) 318 WP_003155166.1 YbjQ family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22444.74 Da        Isoelectric Point: 8.1419

>NTDB_id=369803 D073_RS05360 WP_020955599.1 1027601..1028179(+) (comK) [Bacillus velezensis strain At1]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELWERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=369803 D073_RS05360 WP_020955599.1 1027601..1028179(+) (comK) [Bacillus velezensis strain At1]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCTGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGTGGGAGAGATATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

81.771

100

0.818

Multiple sequence alignment