Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   D073_RS01790 Genome accession   NZ_CP041145
Coordinates   337555..337992 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain At1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 332555..342992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D073_RS01765 (D073_0338) - 333575..334711 (+) 1137 WP_020955302.1 zinc-dependent alcohol dehydrogenase -
  D073_RS01770 (D073_0339) - 334726..335160 (+) 435 WP_020955303.1 RDD family protein -
  D073_RS01775 (D073_0340) - 335277..335555 (+) 279 WP_263612330.1 YckD family protein -
  D073_RS01780 (D073_0341) - 335659..337095 (+) 1437 WP_007409356.1 glycoside hydrolase family 1 protein -
  D073_RS01785 (D073_0342) nin/comJ 337136..337534 (-) 399 WP_020955304.1 competence protein ComJ Regulator
  D073_RS01790 (D073_0343) nucA/comI 337555..337992 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  D073_RS01795 (D073_0344) hxlB 338349..338906 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  D073_RS01800 (D073_0345) hxlA 338903..339538 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  D073_RS01805 (D073_0346) - 339770..340132 (+) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=369793 D073_RS01790 WP_003156588.1 337555..337992(-) (nucA/comI) [Bacillus velezensis strain At1]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=369793 D073_RS01790 WP_003156588.1 337555..337992(-) (nucA/comI) [Bacillus velezensis strain At1]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment