Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   FIM06_RS20340 Genome accession   NZ_CP041144
Coordinates   352900..353064 (+) Length   54 a.a.
NCBI ID   WP_269195014.1    Uniprot ID   -
Organism   Bacillus velezensis strain UCMB5044     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 347900..358064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIM06_RS20335 srfAB 349791..352883 (+) 3093 Protein_316 surfactin non-ribosomal peptide synthetase SrfAB -
  FIM06_RS20340 comS 352900..353064 (+) 165 WP_269195014.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6238.22 Da        Isoelectric Point: 11.7559

>NTDB_id=369785 FIM06_RS20340 WP_269195014.1 352900..353064(+) (comS) [Bacillus velezensis strain UCMB5044]
MRARRNSSLNRSDKRLIRSIILFPQHSAGCISLISSDRPARATTSLLYFCWKDQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=369785 FIM06_RS20340 WP_269195014.1 352900..353064(+) (comS) [Bacillus velezensis strain UCMB5044]
ATGAGAGCGAGGAGGAACAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTCTGCTGGAAGGATC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

58.696

85.185

0.5

Multiple sequence alignment