Detailed information NTG0369779

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: G3M71_RS05110
• Genome accession: NZ_CP048603
• Coordinates: 1079432..1080424 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ChlosBP-23-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1074432..1085424

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G3M71_RS05080 (G3M71_05080)	ispD	1074493..1075203 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
G3M71_RS05085 (G3M71_05085)	ispF	1075203..1075682 (+)	480	WP_001219238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
G3M71_RS05090 (G3M71_05090)	truD	1075679..1076728 (+)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
G3M71_RS05095 (G3M71_05095)	surE	1076709..1077470 (+)	762	WP_163388449.1	5'/3'-nucleotidase SurE	-
G3M71_RS05100 (G3M71_05100)	pcm	1077464..1078090 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
G3M71_RS05105 (G3M71_05105)	nlpD	1078275..1079369 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
G3M71_RS05110 (G3M71_05110)	rpoS	1079432..1080424 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
G3M71_RS05115 (G3M71_05115)	-	1080602..1081153 (-)	552	WP_001179443.1	flavodoxin family protein	-
G3M71_RS05120 (G3M71_05120)	-	1081409..1082446 (-)	1038	WP_001298185.1	IS630-like element ISEc40 family transposase	-
G3M71_RS05125 (G3M71_05125)	-	1082480..1083520 (+)	1041	WP_163388821.1	MBL fold metallo-hydrolase	-
G3M71_RS05130 (G3M71_05130)	ygbN	1083663..1085027 (-)	1365	WP_105467659.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=369779 G3M71_RS05110 WP_000081550.1 1079432..1080424(+) (rpoS) [Escherichia coli strain ChlosBP-23-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=369779 G3M71_RS05110 WP_000081550.1 1079432..1080424(+) (rpoS) [Escherichia coli strain ChlosBP-23-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715