Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   FIM06_RS13060 Genome accession   NZ_CP041144
Coordinates   2651756..2652508 (-) Length   250 a.a.
NCBI ID   WP_105937480.1    Uniprot ID   -
Organism   Bacillus velezensis strain UCMB5044     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2646756..2657508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIM06_RS13035 (FIM06_2431) mreC 2647192..2648055 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  FIM06_RS13040 (FIM06_2432) mreB 2648086..2649099 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  FIM06_RS13045 (FIM06_2433) radC 2649191..2649886 (-) 696 WP_007408165.1 DNA repair protein RadC -
  FIM06_RS13050 (FIM06_2434) - 2649918..2650487 (-) 570 WP_012118105.1 nucleoside triphosphate pyrophosphatase -
  FIM06_RS13055 (FIM06_2435) - 2650628..2651629 (-) 1002 WP_105937481.1 SPOR domain-containing protein -
  FIM06_RS13060 (FIM06_2436) comC 2651756..2652508 (-) 753 WP_105937480.1 A24 family peptidase Machinery gene
  FIM06_RS13065 (FIM06_2437) - 2652648..2653940 (-) 1293 WP_105937479.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  FIM06_RS13070 (FIM06_2438) - 2653999..2656641 (-) 2643 WP_105937478.1 valine--tRNA ligase -
  FIM06_RS13075 (FIM06_2439) - 2657094..2657285 (+) 192 WP_007612879.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27205.91 Da        Isoelectric Point: 9.4293

>NTDB_id=369764 FIM06_RS13060 WP_105937480.1 2651756..2652508(-) (comC) [Bacillus velezensis strain UCMB5044]
MLLILFFLGLIFGSFFYTAACRIPLRISVVSPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=369764 FIM06_RS13060 WP_105937480.1 2651756..2652508(-) (comC) [Bacillus velezensis strain UCMB5044]
GTGCTTTTGATTCTGTTTTTTCTCGGTTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTGTTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCTT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GGCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTAAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTCGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment