Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   FIM06_RS11935 Genome accession   NZ_CP041144
Coordinates   2452069..2452404 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain UCMB5044     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2447069..2457404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIM06_RS11915 (FIM06_2220) gcvT 2447675..2448775 (-) 1101 WP_012117974.1 glycine cleavage system aminomethyltransferase GcvT -
  FIM06_RS11920 (FIM06_2221) - 2449199..2450869 (+) 1671 WP_045208236.1 DEAD/DEAH box helicase -
  FIM06_RS11925 (FIM06_2222) - 2450891..2451685 (+) 795 WP_007612541.1 YqhG family protein -
  FIM06_RS11930 (FIM06_2223) sinI 2451862..2452035 (+) 174 WP_007612543.1 anti-repressor SinI Regulator
  FIM06_RS11935 (FIM06_2224) sinR 2452069..2452404 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  FIM06_RS11940 (FIM06_2225) tasA 2452452..2453237 (-) 786 WP_044802563.1 biofilm matrix protein TasA -
  FIM06_RS11945 (FIM06_2226) sipW 2453302..2453886 (-) 585 WP_015240205.1 signal peptidase I SipW -
  FIM06_RS11950 (FIM06_2227) tapA 2453858..2454529 (-) 672 WP_044802562.1 amyloid fiber anchoring/assembly protein TapA -
  FIM06_RS11955 (FIM06_2228) - 2454788..2455117 (+) 330 WP_038459175.1 DUF3889 domain-containing protein -
  FIM06_RS11960 (FIM06_2229) - 2455158..2455337 (-) 180 WP_022552966.1 YqzE family protein -
  FIM06_RS11965 (FIM06_2230) comGG 2455394..2455771 (-) 378 WP_038459177.1 competence type IV pilus minor pilin ComGG Machinery gene
  FIM06_RS11970 (FIM06_2231) comGF 2455772..2456272 (-) 501 WP_228842201.1 competence type IV pilus minor pilin ComGF -
  FIM06_RS11975 (FIM06_2232) comGE 2456181..2456495 (-) 315 WP_105937524.1 competence type IV pilus minor pilin ComGE -
  FIM06_RS11980 (FIM06_2233) comGD 2456479..2456916 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  FIM06_RS11985 (FIM06_2234) comGC 2456906..2457214 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=369751 FIM06_RS11935 WP_003153104.1 2452069..2452404(+) (sinR) [Bacillus velezensis strain UCMB5044]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=369751 FIM06_RS11935 WP_003153104.1 2452069..2452404(+) (sinR) [Bacillus velezensis strain UCMB5044]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment