Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FIM06_RS11755 Genome accession   NZ_CP041144
Coordinates   2420427..2422157 (-) Length   576 a.a.
NCBI ID   WP_032874060.1    Uniprot ID   -
Organism   Bacillus velezensis strain UCMB5044     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2415427..2427157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIM06_RS11730 (FIM06_2183) - 2415846..2416058 (+) 213 WP_234017442.1 spore germination protein -
  FIM06_RS11735 (FIM06_2184) - 2416184..2416396 (+) 213 WP_007612499.1 spore germination protein -
  FIM06_RS11740 (FIM06_2185) alr 2416573..2417754 (+) 1182 WP_025649856.1 alanine racemase -
  FIM06_RS11745 (FIM06_2186) spo0A 2417902..2418702 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  FIM06_RS11750 (FIM06_2187) spoIVB 2418983..2420263 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  FIM06_RS11755 (FIM06_2188) recN 2420427..2422157 (-) 1731 WP_032874060.1 DNA repair protein RecN Machinery gene
  FIM06_RS11760 (FIM06_2189) ahrC 2422189..2422638 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  FIM06_RS11765 (FIM06_2190) - 2422735..2423580 (-) 846 WP_007612503.1 TlyA family RNA methyltransferase -
  FIM06_RS11770 (FIM06_2191) dxs 2423577..2425478 (-) 1902 WP_044802571.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FIM06_RS11775 (FIM06_2192) - 2425622..2426512 (-) 891 WP_105937530.1 polyprenyl synthetase family protein -
  FIM06_RS11780 (FIM06_2193) - 2426502..2426756 (-) 255 WP_007408352.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64065.88 Da        Isoelectric Point: 4.7608

>NTDB_id=369749 FIM06_RS11755 WP_032874060.1 2420427..2422157(-) (recN) [Bacillus velezensis strain UCMB5044]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFDVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDRFAGAEAESALQ
AYHEGYERYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLEALKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELKSLYMGKSTFDTEFLV
KTDPSASEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAMKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKEFKDGRTTTHVTPLSKQDKVAEIGRMIAGVEVTDLTKR
HAQELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=369749 FIM06_RS11755 WP_032874060.1 2420427..2422157(-) (recN) [Bacillus velezensis strain UCMB5044]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGGGCCGGCAAGTCAATTATTATAGACGCCGTTTCCTTATTAGTCGGCGGCCGCGGCTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTTTTGGACAGCGGTCATCCCGTTTTTGATGTATGC
CGTGAGCAGGGAATAGACGCATCTGATGACATGATTGTCATGAGAAGGGACATCAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTGACGATTGCGGCTTTAAGGGAAATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATGGAAGATGACAAACACTTGGAGCTTTTGGACAGGTTTGCGGGCGCTGAGGCCGAATCCGCGCTTCAG
GCTTACCATGAAGGCTATGAGCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAAAGCGAGCAGGAAATGGC
GCATCGGTTAGACCTGATTCAATTTCAGCTTGAAGAAATCGAGTCGGCGAAGCTTGAATTGAATGAAGACGAACTTCTTC
AGGAAGAGCGGAAGCAGATATCCAACTTTGAAAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGCGAG
CAGGGGGGGCTTGACTGGGTCGGAATGGCCTCTGCCCAGCTTGAAGATATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCTGAAAGTGTGTCAAGTTCTTATTATCTGCTGGAGGATGCAACCTTTCAGATGCGCAATCTGTTAGATGATCTGGAAT
ATGACCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAATGAGATCAAACAGCTGAAGCGCAAATACGGAGCGACGGTA
GAAGACATTTTGGAATACGGCTCCAAAATAGAAGAGGAAATCGATCAAATCGAGAACCGCGACAGCCACCTTGAAGCGCT
GAAGAAGGAATTGGAGTCGGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAATTTATCAAAAATCAGAAAAGCTTGGGCTA
AGAAACTGGCGGAAGCGATTCATCAGGAATTAAAAAGTCTGTATATGGGCAAATCAACGTTTGATACGGAATTTCTCGTG
AAAACCGATCCGTCAGCCAGTGAAGCACCGGTTGTTAACGGGCAGCCTGTGCAGCTTACCCAAAAGGGGATTGACCTTGT
GAAGTTTTTAATTTCAACAAACACCGGTGAGCCTTTAAAACCGCTGTCAAAGGTCGCTTCCGGAGGCGAGCTTTCAAGGG
TGATGCTGGCGATGAAGAGTATTTTTTCTTCCCAGCAGGATGTCACCTCCATCATCTTTGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCCCAAGCCATCGCGGAAAAAATCCATAAAGTATCGACCGGTTCACAGGTGCTCTGCATTACACACCT
GCCGCAGGTTGCCGCCATGGCGGATACGCACCTTCTGATCGCAAAAGAATTCAAAGACGGCCGGACGACAACGCATGTCA
CGCCGCTTTCCAAACAGGACAAGGTAGCGGAAATCGGCCGCATGATTGCGGGCGTTGAAGTGACCGATCTGACAAAACGG
CATGCACAAGAGCTTCTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

88.715

100

0.887

Multiple sequence alignment