Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   FIM06_RS10680 Genome accession   NZ_CP041144
Coordinates   2172141..2172749 (+) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus velezensis strain UCMB5044     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2167141..2177749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIM06_RS10640 (FIM06_1971) - 2168160..2168666 (-) 507 WP_088461041.1 PTS glucose transporter subunit IIA -
  FIM06_RS10645 (FIM06_1972) - 2168805..2169218 (+) 414 WP_007612169.1 Hsp20/alpha crystallin family protein -
  FIM06_RS10650 (FIM06_1973) - 2169248..2169715 (-) 468 WP_105937586.1 YppG family protein -
  FIM06_RS10655 (FIM06_1974) - 2169902..2170084 (+) 183 WP_003153532.1 YppF family protein -
  FIM06_RS10660 (FIM06_1975) - 2170124..2170492 (-) 369 WP_105937585.1 YppE family protein -
  FIM06_RS10665 (FIM06_1976) - 2170538..2170783 (-) 246 WP_014418233.1 DUF5446 family protein -
  FIM06_RS10670 sspM 2170989..2171093 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  FIM06_RS10675 (FIM06_1977) - 2171137..2172099 (-) 963 WP_014305287.1 DUF2515 domain-containing protein -
  FIM06_RS10680 (FIM06_1978) recU 2172141..2172749 (+) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  FIM06_RS10685 (FIM06_1979) - 2172788..2175571 (+) 2784 WP_105937584.1 PBP1A family penicillin-binding protein -
  FIM06_RS10690 (FIM06_1980) - 2175647..2176138 (-) 492 WP_105937583.1 YpoC family protein -
  FIM06_RS10695 (FIM06_1981) nth 2176135..2176794 (-) 660 WP_007612187.1 endonuclease III -
  FIM06_RS10700 (FIM06_1982) dnaD 2176813..2177511 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=369747 FIM06_RS10680 WP_012117837.1 2172141..2172749(+) (recU) [Bacillus velezensis strain UCMB5044]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=369747 FIM06_RS10680 WP_012117837.1 2172141..2172749(+) (recU) [Bacillus velezensis strain UCMB5044]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGATCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACCGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAACATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment