Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   FIM06_RS07095 Genome accession   NZ_CP041144
Coordinates   1354085..1354681 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain UCMB5044     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1349085..1359681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIM06_RS07065 (FIM06_1337) - 1349300..1349755 (+) 456 WP_032874735.1 flavodoxin -
  FIM06_RS07070 (FIM06_1338) dapD 1349837..1350547 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  FIM06_RS07075 (FIM06_1339) - 1350618..1351742 (+) 1125 WP_105937788.1 N-acetyldiaminopimelate deacetylase -
  FIM06_RS07080 (FIM06_1340) - 1351803..1352048 (+) 246 WP_003154596.1 YkuS family protein -
  FIM06_RS07085 (FIM06_1341) - 1352082..1352888 (-) 807 WP_007611108.1 mechanosensitive ion channel family protein -
  FIM06_RS07090 (FIM06_1342) - 1353175..1353633 (+) 459 WP_105937787.1 TlpA disulfide reductase family protein -
  FIM06_RS07095 (FIM06_1343) rok 1354085..1354681 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  FIM06_RS07100 (FIM06_1344) - 1354705..1355697 (-) 993 WP_105937786.1 sporulation protein -
  FIM06_RS07105 (FIM06_1345) - 1355843..1356445 (+) 603 WP_007611112.1 molybdenum cofactor guanylyltransferase -
  FIM06_RS07110 (FIM06_1346) - 1356497..1357516 (+) 1020 WP_105937785.1 molybdopterin-synthase adenylyltransferase MoeB -
  FIM06_RS07115 (FIM06_1347) glp 1357534..1358826 (+) 1293 WP_105937784.1 gephyrin-like molybdotransferase Glp -
  FIM06_RS07120 (FIM06_1348) mobB 1358787..1359308 (+) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=369740 FIM06_RS07095 WP_003154591.1 1354085..1354681(+) (rok) [Bacillus velezensis strain UCMB5044]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=369740 FIM06_RS07095 WP_003154591.1 1354085..1354681(+) (rok) [Bacillus velezensis strain UCMB5044]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment