Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   FIM06_RS06995 Genome accession   NZ_CP041144
Coordinates   1338270..1338734 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain UCMB5044     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1333270..1343734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIM06_RS06975 (FIM06_1319) - 1333751..1335571 (+) 1821 WP_105937795.1 PAS domain-containing protein -
  FIM06_RS06980 (FIM06_1320) - 1335552..1336765 (-) 1214 Protein_1304 aminotransferase A -
  FIM06_RS20155 (FIM06_1321) - 1336966..1337127 (-) 162 WP_007409608.1 hypothetical protein -
  FIM06_RS06990 (FIM06_1322) cheV 1337316..1338227 (+) 912 WP_105937793.1 chemotaxis protein CheV -
  FIM06_RS06995 (FIM06_1323) kre 1338270..1338734 (-) 465 WP_003154622.1 YkyB family protein Regulator
  FIM06_RS07000 (FIM06_1324) - 1338857..1340149 (-) 1293 WP_105937792.1 MFS transporter -
  FIM06_RS07005 (FIM06_1325) - 1340226..1340720 (-) 495 WP_088462390.1 L,D-transpeptidase family protein -
  FIM06_RS07010 (FIM06_1326) - 1340795..1341658 (-) 864 WP_105937791.1 metallophosphoesterase -
  FIM06_RS07015 (FIM06_1327) fadH 1341802..1342566 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  FIM06_RS07020 (FIM06_1328) - 1342680..1343183 (+) 504 WP_105937790.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=369739 FIM06_RS06995 WP_003154622.1 1338270..1338734(-) (kre) [Bacillus velezensis strain UCMB5044]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=369739 FIM06_RS06995 WP_003154622.1 1338270..1338734(-) (kre) [Bacillus velezensis strain UCMB5044]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment