Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   G3M67_RS02880 Genome accession   NZ_CP048601
Coordinates   618043..618921 (-) Length   292 a.a.
NCBI ID   WP_000481582.1    Uniprot ID   -
Organism   Helicobacter pylori strain GCT 27     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 613043..623921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M67_RS02855 (G3M67_02855) flhB 613737..614813 (-) 1077 WP_163524503.1 flagellar biosynthesis protein FlhB -
  G3M67_RS02860 (G3M67_02860) mobA 614806..615411 (-) 606 WP_205424828.1 molybdenum cofactor guanylyltransferase MobA -
  G3M67_RS02865 (G3M67_02865) moaA 615497..616462 (+) 966 WP_163524505.1 GTP 3',8-cyclase MoaA -
  G3M67_RS02870 (G3M67_02870) - 616797..617625 (+) 829 Protein_583 sortase -
  G3M67_RS02875 (G3M67_02875) - 617686..618006 (+) 321 WP_163524506.1 YkgJ family cysteine cluster protein -
  G3M67_RS02880 (G3M67_02880) pilA 618043..618921 (-) 879 WP_000481582.1 signal recognition particle-docking protein FtsY Machinery gene
  G3M67_RS02885 (G3M67_02885) - 618927..619484 (-) 558 WP_163524507.1 hypothetical protein -
  G3M67_RS02890 (G3M67_02890) - 619582..620250 (+) 669 WP_163525607.1 5-formyltetrahydrofolate cyclo-ligase -
  G3M67_RS02895 (G3M67_02895) rny 620228..621739 (+) 1512 WP_240331406.1 ribonuclease Y -
  G3M67_RS02900 (G3M67_02900) - 621740..623056 (-) 1317 WP_240331409.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 32525.77 Da        Isoelectric Point: 7.4169

>NTDB_id=369735 G3M67_RS02880 WP_000481582.1 618043..618921(-) (pilA) [Helicobacter pylori strain GCT 27]
MFNFFKKIVNKIKGEEKEKKRENIPKEELEEILIGFDIQYDLIESLLKHLGDLVTPKQLEVALLRFVRGESYYDKTRLKT
ITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNVQVISAKEGSDPSSLAYNTI
ESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKL
DGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLVDAVFVEQ

Nucleotide


Download         Length: 879 bp        

>NTDB_id=369735 G3M67_RS02880 WP_000481582.1 618043..618921(-) (pilA) [Helicobacter pylori strain GCT 27]
ATGTTTAATTTTTTCAAAAAAATTGTCAATAAGATTAAGGGCGAAGAGAAAGAAAAAAAGCGTGAAAATATCCCTAAAGA
GGAATTAGAAGAAATTTTGATTGGCTTTGACATCCAATACGATTTGATAGAGAGCCTGTTAAAGCATTTAGGCGATTTAG
TTACGCCCAAGCAATTAGAAGTCGCTTTGTTGCGTTTTGTGCGTGGGGAAAGTTACTATGATAAAACCCGCCTAAAAACT
ATCACCACAAAACCCTTAGTGCATCTCATCGTGGGGGTTAATGGGGCGGGTAAAACCACAACGATCGCTAAATTAGCCAA
ACTCTCTTTAAAACAGCATAAAAAAGCGCTTTTAGGAGCCGGCGATACCTTTAGAGCGGCCGCAGTCAAACAGCTCCAAT
TATGGGGCGAAAAGCTTAATGTTCAAGTCATTAGCGCTAAAGAAGGGAGCGATCCAAGCTCTCTAGCTTATAACACCATA
GAAAGCGCGATCGCTAAAAATATAGATGAAGTTTTTATAGACACCGCCGGGAGGCTGCACAACCAAACCAACCTTAAAAA
CGAGCTTTCTAAAATCGCACGCACCTGCTCTAAAGTTTTAAAAGACGCCCCCTTTTACAAATTCCTTATTTTAGACGGCA
CGCAAGGGAGTTCTGGACTAACGCAAGCGAAAATTTTCCATGAGACTTTGGCGTTAGACGGCGTGATCATGACTAAGCTT
GATGGCACTTCTAAGGGCGGAGCGATTTTAAGCGTGCTGTATGAGTTGAAATTACCCATTCTTTATTTAGGAATGGGCGA
AAAAGAAGATGATTTGATCGCTTTTGATGAAGAACGCTTTATAGAAGATTTGGTTGATGCGGTGTTTGTGGAACAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(86-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.573

91.438

0.38

Multiple sequence alignment