Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G3M67_RS02740 Genome accession   NZ_CP048601
Coordinates   585490..587010 (+) Length   506 a.a.
NCBI ID   WP_163524488.1    Uniprot ID   -
Organism   Helicobacter pylori strain GCT 27     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 580490..592010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M67_RS02710 (G3M67_02710) moaC 580637..581113 (+) 477 WP_163524485.1 cyclic pyranopterin monophosphate synthase MoaC -
  G3M67_RS02715 (G3M67_02715) hpaA 581232..582014 (+) 783 WP_000855942.1 flagellar sheath lipoprotein HpaA -
  G3M67_RS02720 (G3M67_02720) - 582043..582879 (+) 837 WP_163524486.1 outer membrane protein -
  G3M67_RS02725 (G3M67_02725) tig 582992..584347 (+) 1356 WP_163524487.1 trigger factor -
  G3M67_RS02730 (G3M67_02730) clpP 584368..584955 (+) 588 WP_000540576.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  G3M67_RS02735 (G3M67_02735) def 584960..585484 (+) 525 WP_120946818.1 peptide deformylase -
  G3M67_RS02740 (G3M67_02740) comM 585490..587010 (+) 1521 WP_163524488.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G3M67_RS02745 (G3M67_02745) - 587035..589095 (+) 2061 WP_163524489.1 heavy metal translocating P-type ATPase -
  G3M67_RS02750 (G3M67_02750) - 589110..589307 (+) 198 Protein_560 restriction endonuclease subunit M -
  G3M67_RS02755 (G3M67_02755) - 589394..590197 (+) 804 WP_163524490.1 CAAX protease -
  G3M67_RS02760 (G3M67_02760) - 590158..591357 (+) 1200 WP_163524491.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57179.13 Da        Isoelectric Point: 8.2333

>NTDB_id=369734 G3M67_RS02740 WP_163524488.1 585490..587010(+) (comM) [Helicobacter pylori strain GCT 27]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIAILIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKRPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIVNR
MHYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYDTSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNTEAQKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=369734 G3M67_RS02740 WP_163524488.1 585490..587010(+) (comM) [Helicobacter pylori strain GCT 27]
ATGATCAACACGATATTTTGCGCAACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCGGGCCTGGCTAATAACTCTATTCAAGAAGCCAAGCAACGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCCTTAAAAATCACCATCAACCTTTCCCCATCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTATTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAGCGCCCCCATGCCAAAG
TCATTGCGCCTAAGGCGAACGAAGAGCTTTTTTCGCTTATCCCTAATTTGCAATGTTTTTTTGTGGAGCATTTTAAAGAA
GCGTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAGTTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCCGGGTTTCATAACTTGATTTTAGAAGGAAGTCCAGGGTGTGGGAAAAGCATGATTGTTAATCGC
ATGCACTATATCTTGCCTCCCTTGAGCCTGAATGAAATCTTAGAAGCGACAAAATTACGCATTTTAAGCGAACAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAGAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTTTAA
GAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCCTTGAGAGAGCCTTTAGAAAACAATAAATTAGTGATTTCAAGAGTGCATAGCAAGATTGAATACGACAC
CTCTTTTTTATTCGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCTACTAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTCGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTGTTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAATACTGAAG
CGCAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTCAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTAAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

96.838

100

0.968
  comM Acinetobacter baylyi ADP1

36.986

100

0.374