Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SAA6008_RS00120 Genome accession   NC_017341
Coordinates   29432..30232 (+) Length   266 a.a.
NCBI ID   WP_000088649.1    Uniprot ID   A0A7U7JRT9
Organism   Staphylococcus aureus subsp. aureus str. JKD6008     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 24432..35232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAA6008_RS00105 (SAA6008_00019) walK 25102..26928 (+) 1827 WP_000871600.1 cell wall metabolism sensor histidine kinase WalK -
  SAA6008_RS00110 (SAA6008_00020) yycH 26921..28255 (+) 1335 WP_001060146.1 two-component system activity regulator YycH -
  SAA6008_RS00115 (SAA6008_00021) yycI 28256..29044 (+) 789 WP_001104171.1 two-component system regulatory protein YycI -
  SAA6008_RS00120 (SAA6008_00022) vicX 29432..30232 (+) 801 WP_000088649.1 MBL fold metallo-hydrolase Regulator
  SAA6008_RS00125 (SAA6008_00023) adsA 30459..32777 (+) 2319 WP_000645752.1 LPXTG-anchored adenosine synthase AdsA -
  SAA6008_RS00130 (SAA6008_00025) rlmH 33145..33624 (+) 480 WP_000704775.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SAA6008_RS00135 (SAA6008_00026) - 33844..35094 (+) 1251 WP_000566673.1 DUF3578 domain-containing protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30313.52 Da        Isoelectric Point: 6.3392

>NTDB_id=36972 SAA6008_RS00120 WP_000088649.1 29432..30232(+) (vicX) [Staphylococcus aureus subsp. aureus str. JKD6008]
MSRLIRMSVLASGSTGNATFVENEKGSLLVDVGLTGKKMEELFSQIDRNIQDLNGILVTHEHIDHIKGLGVLARKYQLPI
YANEKTWQAIEKKDSRIPMDQKFIFNPYETKSIAGFDVESFNVSHDAIDPQFYIFHNNYKKFTILTDTGYVSDRMKGMIR
GSDAFIFESNHDVDMLRMCRYPWKTKQRILGDMGHVSNEDAGHAMTDVITGNTKRIYLSHLSQDNNMKDLARMSVGQVLN
EHDIDTEKEVLLCDTDKAIPTPIYTI

Nucleotide


Download         Length: 801 bp        

>NTDB_id=36972 SAA6008_RS00120 WP_000088649.1 29432..30232(+) (vicX) [Staphylococcus aureus subsp. aureus str. JKD6008]
ATGAGCCGCTTGATACGCATGAGTGTATTAGCAAGTGGTAGTACAGGTAACGCCACTTTTGTAGAAAATGAAAAAGGTAG
TCTATTAGTTGATGTTGGTTTGACTGGCAAGAAAATGGAAGAATTGTTTAGTCAAATTGACCGTAATATTCAAGATTTAA
ATGGTATTTTAGTAACCCATGAACATATTGATCATATTAAAGGATTAGGTGTTTTGGCGCGTAAATATCAATTGCCAATT
TATGCGAATGAAAAGACTTGGCAGGCAATTGAAAAGAAAGATAGTCGCATCCCTATGGATCAGAAATTCATTTTTAATCC
TTATGAAACGAAATCTATTGCAGGTTTCGATGTTGAATCGTTTAACGTGTCACATGATGCGATAGATCCGCAATTTTATA
TTTTCCATAATAACTATAAGAAGTTTACGATTTTAACGGATACGGGTTACGTGTCTGATCGTATGAAAGGTATGATACGT
GGCAGCGATGCGTTTATTTTTGAAAGTAATCATGACGTCGATATGTTGAGAATGTGTCGTTATCCATGGAAGACGAAACA
ACGTATTTTAGGCGATATGGGTCATGTATCTAATGAGGATGCGGGTCATGCGATGACAGACGTGATTACAGGTAACACGA
AACGTATTTACCTATCGCATTTATCACAAGATAATAACATGAAAGATTTGGCGCGTATGAGTGTTGGCCAAGTATTGAAC
GAACACGATATTGATACGGAAAAAGAAGTATTGCTATGTGATACGGATAAAGCTATTCCAACGCCAATATATACAATATA
A

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(14-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7JRT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

49.027

96.617

0.474

Multiple sequence alignment