Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G3M67_RS00590 Genome accession   NZ_CP048601
Coordinates   124308..124766 (+) Length   152 a.a.
NCBI ID   WP_000783554.1    Uniprot ID   -
Organism   Helicobacter pylori strain GCT 27     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 119308..129766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M67_RS00570 (G3M67_00570) dnaK 119544..121406 (+) 1863 WP_163524255.1 molecular chaperone DnaK -
  G3M67_RS00575 (G3M67_00575) - 121660..121944 (+) 285 WP_000235994.1 hypothetical protein -
  G3M67_RS08120 - 121970..122115 (-) 146 Protein_118 adenine methyltransferase -
  G3M67_RS00580 (G3M67_00580) - 122190..123107 (+) 918 WP_163524256.1 O-acetylserine-dependent cystathionine beta-synthase -
  G3M67_RS00585 (G3M67_00585) - 123128..124270 (+) 1143 WP_163524257.1 cystathionine gamma-synthase -
  G3M67_RS00590 (G3M67_00590) luxS 124308..124766 (+) 459 WP_000783554.1 S-ribosylhomocysteine lyase Regulator
  G3M67_RS00595 (G3M67_00595) - 124947..126647 (+) 1701 WP_338325501.1 5'-nucleotidase C-terminal domain-containing protein -
  G3M67_RS00600 (G3M67_00600) tlpB 126858..128555 (+) 1698 WP_163524259.1 methyl-accepting chemotaxis protein TlpB -
  G3M67_RS00605 (G3M67_00605) - 128587..129378 (+) 792 WP_163524260.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17327.69 Da        Isoelectric Point: 6.3774

>NTDB_id=369719 G3M67_RS00590 WP_000783554.1 124308..124766(+) (luxS) [Helicobacter pylori strain GCT 27]
MKMNVESFNLDHTKVKAPYVRIADRKKGANGDVIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHASYVVDWSPMGC
QTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQDLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=369719 G3M67_RS00590 WP_000783554.1 124308..124766(+) (luxS) [Helicobacter pylori strain GCT 27]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGATCGCAAAAA
GGGCGCTAATGGGGATGTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAACCAAGATCACATGGACATGCCTAGCC
TACACTCTTTAGAGCATTTAGTCGCTGAGATTATCCGCAACCATGCCAGTTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACGGGGTTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGACGATGCAAGA
TGTGTTAAAGGCTAAAGAAGTGCCTGCCAGCAATGAAAAACAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGCGCAC
AGGATTTAGCGCGCGCTTTTTTGGACAAACGCGCTGAATGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

40.426

92.763

0.375

Multiple sequence alignment