Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   FIM06_RS01820 Genome accession   NZ_CP041144
Coordinates   335848..336285 (-) Length   145 a.a.
NCBI ID   WP_038456921.1    Uniprot ID   -
Organism   Bacillus velezensis strain UCMB5044     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 330848..341285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIM06_RS01785 (FIM06_0348) - 331702..332904 (+) 1203 WP_105938116.1 GTP-binding protein -
  FIM06_RS01790 (FIM06_0349) - 332969..334105 (+) 1137 WP_105938115.1 zinc-dependent alcohol dehydrogenase -
  FIM06_RS01795 (FIM06_0350) - 334120..334554 (+) 435 WP_088461456.1 RDD family protein -
  FIM06_RS01800 (FIM06_0351) - 334628..334951 (+) 324 WP_105938114.1 YckD family protein -
  FIM06_RS20600 - 335055..335246 (+) 192 WP_158700717.1 family 1 glycosylhydrolase -
  FIM06_RS01810 (FIM06_0352) - 335171..335388 (+) 218 Protein_309 family 1 glycosylhydrolase -
  FIM06_RS01815 (FIM06_0353) nin/comJ 335429..335827 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  FIM06_RS01820 (FIM06_0354) nucA/comI 335848..336285 (-) 438 WP_038456921.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  FIM06_RS01825 (FIM06_0355) hxlB 336642..337199 (-) 558 WP_038456922.1 6-phospho-3-hexuloisomerase -
  FIM06_RS01830 (FIM06_0356) hxlA 337196..337831 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  FIM06_RS01835 (FIM06_0357) - 338063..338425 (+) 363 WP_105938112.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16099.38 Da        Isoelectric Point: 8.4850

>NTDB_id=369718 FIM06_RS01820 WP_038456921.1 335848..336285(-) (nucA/comI) [Bacillus velezensis strain UCMB5044]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKNDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=369718 FIM06_RS01820 WP_038456921.1 335848..336285(-) (nucA/comI) [Bacillus velezensis strain UCMB5044]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAATGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGTCGT
GAGCAATCTCTTAAACATGTACCTGTAAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment