Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | FIM06_RS00580 | Genome accession | NZ_CP041144 |
| Coordinates | 104116..106548 (+) | Length | 810 a.a. |
| NCBI ID | WP_015239036.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain UCMB5044 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 99116..111548
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FIM06_RS00565 (FIM06_0112) | ctsR | 101993..102457 (+) | 465 | WP_003156396.1 | transcriptional regulator CtsR | - |
| FIM06_RS00570 (FIM06_0113) | - | 102471..103028 (+) | 558 | WP_007410387.1 | UvrB/UvrC motif-containing protein | - |
| FIM06_RS00575 (FIM06_0114) | - | 103028..104119 (+) | 1092 | WP_003156398.1 | protein arginine kinase | - |
| FIM06_RS00580 (FIM06_0115) | clpC | 104116..106548 (+) | 2433 | WP_015239036.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| FIM06_RS00585 (FIM06_0116) | radA | 106642..108021 (+) | 1380 | WP_014416742.1 | DNA repair protein RadA | Machinery gene |
| FIM06_RS00590 (FIM06_0117) | disA | 108025..109107 (+) | 1083 | WP_007615225.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| FIM06_RS00595 (FIM06_0118) | - | 109221..110321 (+) | 1101 | WP_105938181.1 | PIN/TRAM domain-containing protein | - |
| FIM06_RS00600 (FIM06_0119) | ispD | 110334..111032 (+) | 699 | WP_038456709.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| FIM06_RS00605 (FIM06_0120) | ispF | 111025..111501 (+) | 477 | WP_038456712.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
Sequence
Protein
Download Length: 810 a.a. Molecular weight: 90040.49 Da Isoelectric Point: 5.9514
>NTDB_id=369714 FIM06_RS00580 WP_015239036.1 104116..106548(+) (clpC) [Bacillus velezensis strain UCMB5044]
MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQKEVESLIGRGQEMSQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSASGTNSNANT
PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMVV
SSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
SIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLT
DIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDGE
FVVKTTAKTN
MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQKEVESLIGRGQEMSQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSASGTNSNANT
PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMVV
SSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
SIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLT
DIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDGE
FVVKTTAKTN
Nucleotide
Download Length: 2433 bp
>NTDB_id=369714 FIM06_RS00580 WP_015239036.1 104116..106548(+) (clpC) [Bacillus velezensis strain UCMB5044]
ATGATGTTTGGAAGGTTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCACTGCGCTTAGGCCATAA
CAATATTGGAACTGAACATATCTTATTAGGTCTGGTTCGTGAAGGAGAAGGGATTGCAGCTAAAGCACTCCAAGCACTCG
GACTCGGTTCGGATAAAATTCAGAAAGAAGTGGAGAGCTTAATCGGACGGGGACAGGAAATGTCTCAAACGATTCATTAT
ACGCCAAGAGCAAAAAAAGTCATTGAGCTCAGCATGGATGAAGCCAGAAAGCTAGGACATTCTTATGTGGGAACAGAACA
CATACTTCTCGGACTGATTCGTGAAGGAGAAGGCGTGGCCGCGAGAGTTCTGAACAATCTCGGTGTCAGCTTGAATAAGG
CGAGACAGCAAGTGCTGCAGCTTCTGGGAAGCAATGAGACGGGGTCTTCTGCATCCGGTACGAACAGCAATGCAAACACG
CCGACGCTTGACAGTCTGGCTCGTGATTTAACTGCGATTGCGAAGGAAGACAGTCTTGATCCGGTTATCGGCCGAAGCAA
AGAAATTCAGCGTGTTATTGAGGTGTTAAGCCGCAGAACGAAGAATAACCCCGTTCTTATCGGAGAACCGGGTGTAGGTA
AAACTGCGATTGCTGAAGGCCTCGCACAGCAGATCATCAATAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTAATG
ACATTAGACATGGGTACGGTTGTAGCTGGTACGAAATACCGCGGAGAATTTGAAGACCGCTTAAAAAAAGTAATGGATGA
AATACGTCAGGCCGGCAATATTATTTTATTCATTGACGAACTGCATACACTGATCGGAGCGGGGGGAGCAGAAGGTGCGA
TTGACGCATCGAATATCTTAAAACCTTCACTGGCCCGCGGAGAGCTTCAATGCATCGGTGCGACAACGCTTGATGAATAC
CGTAAATATATCGAAAAAGACGCCGCTCTGGAGCGCCGTTTCCAGCCGATTCAGGTGGATCAGCCGTCAGCCGATGAAAG
CATTCAAATTTTAAAAGGGCTCCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACCGATGAAGCGATTGAAGCGG
CGGTAAAATTGTCCGACCGTTATATTTCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGATGAAGCCGGTTCA
AAAGTACGTCTCCGTTCTTTCACAACGCCTCCGAACTTAAAAGAGCTTGAGCAGAAACTCGATGAAGTTCGCAAGGAAAA
AGACGCTGCCGTTCAGAGCCAGGAGTTTGAAAAAGCGGCTTCCCTTCGTGATACGGAGCAGCGTCTGAGAGAACAGGTGG
AAGACACGAAAAAAACGTGGAAAGAAAAACAAGGCCAGGAGAACTCCGAAGTTTCTGTAGAGGATATTGCGATGGTTGTA
TCCAGCTGGACCGGGGTGCCTGTATCTAAAATTGCCCAAACGGAAACAGATAAGCTTCTCAATATGGAAAACATTCTGCA
CTCCCGCGTCATCGGCCAGGATGAAGCTGTTGTAGCCGTTGCAAAGGCCGTCAGACGTGCAAGAGCCGGTCTGAAGGACC
CGAAACGCCCGATTGGTTCATTCATCTTCTTAGGCCCTACAGGCGTTGGGAAGACAGAGCTGGCACGAGCGCTGGCGGAA
TCCATTTTCGGTGATGAAGAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACATTCGACTTCACGTCTTGT
CGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTGTCG
TACTGCTTGATGAAATTGAAAAAGCGCATCCTGATGTGTTTAACATACTCCTGCAAGTGCTTGAAGACGGACGCTTGACT
GATTCAAAAGGACGCACTGTGGATTTCCGCAACACGATCCTGATTATGACGTCAAACGTCGGAGCGAGCGAGCTGAAACG
CAACAAATATGTGGGCTTCAATGTCCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTCATGGGAGAGCTGA
AACGTGCCTTCAGACCTGAGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTTACA
GACATCGTGTCGCTTATGTCTGATCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATCGAGCTGACGGATGCTGC
AAAAGCAAAAGTAGCAGAAGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATTCAAAAGCATGTGG
AGGACCGGTTATCAGAAGAACTCCTCAGAGGCAATATTGATAAAGGCCAGCACATTGTTCTTGATGTTGAGGACGGCGAA
TTTGTCGTAAAAACAACTGCTAAAACGAACTAA
ATGATGTTTGGAAGGTTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCACTGCGCTTAGGCCATAA
CAATATTGGAACTGAACATATCTTATTAGGTCTGGTTCGTGAAGGAGAAGGGATTGCAGCTAAAGCACTCCAAGCACTCG
GACTCGGTTCGGATAAAATTCAGAAAGAAGTGGAGAGCTTAATCGGACGGGGACAGGAAATGTCTCAAACGATTCATTAT
ACGCCAAGAGCAAAAAAAGTCATTGAGCTCAGCATGGATGAAGCCAGAAAGCTAGGACATTCTTATGTGGGAACAGAACA
CATACTTCTCGGACTGATTCGTGAAGGAGAAGGCGTGGCCGCGAGAGTTCTGAACAATCTCGGTGTCAGCTTGAATAAGG
CGAGACAGCAAGTGCTGCAGCTTCTGGGAAGCAATGAGACGGGGTCTTCTGCATCCGGTACGAACAGCAATGCAAACACG
CCGACGCTTGACAGTCTGGCTCGTGATTTAACTGCGATTGCGAAGGAAGACAGTCTTGATCCGGTTATCGGCCGAAGCAA
AGAAATTCAGCGTGTTATTGAGGTGTTAAGCCGCAGAACGAAGAATAACCCCGTTCTTATCGGAGAACCGGGTGTAGGTA
AAACTGCGATTGCTGAAGGCCTCGCACAGCAGATCATCAATAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTAATG
ACATTAGACATGGGTACGGTTGTAGCTGGTACGAAATACCGCGGAGAATTTGAAGACCGCTTAAAAAAAGTAATGGATGA
AATACGTCAGGCCGGCAATATTATTTTATTCATTGACGAACTGCATACACTGATCGGAGCGGGGGGAGCAGAAGGTGCGA
TTGACGCATCGAATATCTTAAAACCTTCACTGGCCCGCGGAGAGCTTCAATGCATCGGTGCGACAACGCTTGATGAATAC
CGTAAATATATCGAAAAAGACGCCGCTCTGGAGCGCCGTTTCCAGCCGATTCAGGTGGATCAGCCGTCAGCCGATGAAAG
CATTCAAATTTTAAAAGGGCTCCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACCGATGAAGCGATTGAAGCGG
CGGTAAAATTGTCCGACCGTTATATTTCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGATGAAGCCGGTTCA
AAAGTACGTCTCCGTTCTTTCACAACGCCTCCGAACTTAAAAGAGCTTGAGCAGAAACTCGATGAAGTTCGCAAGGAAAA
AGACGCTGCCGTTCAGAGCCAGGAGTTTGAAAAAGCGGCTTCCCTTCGTGATACGGAGCAGCGTCTGAGAGAACAGGTGG
AAGACACGAAAAAAACGTGGAAAGAAAAACAAGGCCAGGAGAACTCCGAAGTTTCTGTAGAGGATATTGCGATGGTTGTA
TCCAGCTGGACCGGGGTGCCTGTATCTAAAATTGCCCAAACGGAAACAGATAAGCTTCTCAATATGGAAAACATTCTGCA
CTCCCGCGTCATCGGCCAGGATGAAGCTGTTGTAGCCGTTGCAAAGGCCGTCAGACGTGCAAGAGCCGGTCTGAAGGACC
CGAAACGCCCGATTGGTTCATTCATCTTCTTAGGCCCTACAGGCGTTGGGAAGACAGAGCTGGCACGAGCGCTGGCGGAA
TCCATTTTCGGTGATGAAGAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACATTCGACTTCACGTCTTGT
CGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTGTCG
TACTGCTTGATGAAATTGAAAAAGCGCATCCTGATGTGTTTAACATACTCCTGCAAGTGCTTGAAGACGGACGCTTGACT
GATTCAAAAGGACGCACTGTGGATTTCCGCAACACGATCCTGATTATGACGTCAAACGTCGGAGCGAGCGAGCTGAAACG
CAACAAATATGTGGGCTTCAATGTCCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTCATGGGAGAGCTGA
AACGTGCCTTCAGACCTGAGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTTACA
GACATCGTGTCGCTTATGTCTGATCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATCGAGCTGACGGATGCTGC
AAAAGCAAAAGTAGCAGAAGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATTCAAAAGCATGTGG
AGGACCGGTTATCAGAAGAACTCCTCAGAGGCAATATTGATAAAGGCCAGCACATTGTTCTTGATGTTGAGGACGGCGAA
TTTGTCGTAAAAACAACTGCTAAAACGAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
98.395 |
100 |
0.984 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.875 |
98.765 |
0.493 |
| clpC | Streptococcus thermophilus LMD-9 |
46.723 |
100 |
0.475 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.481 |
100 |
0.473 |
| clpC | Streptococcus pneumoniae Rx1 |
45.117 |
99.877 |
0.451 |
| clpC | Streptococcus pneumoniae D39 |
45.117 |
99.877 |
0.451 |
| clpC | Streptococcus mutans UA159 |
43.947 |
100 |
0.448 |
| clpC | Streptococcus pneumoniae TIGR4 |
44.87 |
99.877 |
0.448 |
| clpE | Streptococcus mutans UA159 |
53.313 |
80.123 |
0.427 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
49.709 |
84.938 |
0.422 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.388 |
80.123 |
0.42 |
| clpE | Streptococcus pneumoniae Rx1 |
52.388 |
80.123 |
0.42 |
| clpE | Streptococcus pneumoniae D39 |
52.388 |
80.123 |
0.42 |
| clpE | Streptococcus pneumoniae R6 |
52.388 |
80.123 |
0.42 |