Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   G3M68_RS05490 Genome accession   NZ_CP048600
Coordinates   1169053..1170102 (+) Length   349 a.a.
NCBI ID   WP_163498128.1    Uniprot ID   -
Organism   Helicobacter pylori strain GCT 43     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1164053..1175102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M68_RS05470 (G3M68_05470) rpsR 1164447..1164704 (+) 258 WP_000440196.1 30S ribosomal protein S18 -
  G3M68_RS05475 (G3M68_05475) - 1165021..1166313 (+) 1293 Protein_1104 SabA family sialic acid-binding adhesin -
  G3M68_RS05480 (G3M68_05480) asd 1166636..1167676 (-) 1041 WP_078244769.1 aspartate-semialdehyde dehydrogenase -
  G3M68_RS05485 (G3M68_05485) hisS 1167663..1168991 (-) 1329 WP_078268441.1 histidine--tRNA ligase -
  G3M68_RS05490 (G3M68_05490) waaF 1169053..1170102 (+) 1050 WP_163498128.1 lipopolysaccharide heptosyltransferase II Regulator
  G3M68_RS05495 (G3M68_05495) - 1170291..1170515 (-) 225 WP_163498129.1 hypothetical protein -
  G3M68_RS05500 (G3M68_05500) fusA 1171068..1173146 (-) 2079 WP_000101889.1 elongation factor G -
  G3M68_RS05505 (G3M68_05505) rpsG 1173158..1173625 (-) 468 WP_001254355.1 30S ribosomal protein S7 -
  G3M68_RS05510 (G3M68_05510) rpsL 1173641..1174048 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39490.32 Da        Isoelectric Point: 9.8199

>NTDB_id=369710 G3M68_RS05490 WP_163498128.1 1169053..1170102(+) (waaF) [Helicobacter pylori strain GCT 43]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKRHYPNAHFILVGPTITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAAALLEKGHEIYFFGAKEDAIVSEEILKSVKSLLKNPLLFH
NAYNLCGKTSIEELIQRIAVLDLFITNDSGPMHVATSTKTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLQAAHILLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=369710 G3M68_RS05490 WP_163498128.1 1169053..1170102(+) (waaF) [Helicobacter pylori strain GCT 43]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACGCCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCAACCATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACGACACCAAAAAATCCTTTTTCAGGCTATTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAGAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAACTAGCTTTTAATCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCGGCTTCTTATTACGCTGAAGTTGCGGCTGCTTTGTTGGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAATCCGTTAAAAGCCTATTGAAAAACCCCTTATTGTTCCAT
AATGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGTCCCATGCATGTAGCCACTAGCACGAAAACCCCCCTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTAAACCACCATTTAAGCTGTGCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACATTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.791

98.567

0.372

Multiple sequence alignment