Detailed information NTG0369706

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: G3M68_RS04225
• Genome accession: NZ_CP048600
• Coordinates: 898695..899960 (-)
• Length: 421 a.a.
• NCBI ID: WP_163498003.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain GCT 43
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 893695..904960

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G3M68_RS04185 (G3M68_04185)	-	894812..895879 (-)	1068	WP_163498000.1	tyrosine-type recombinase/integrase	-
G3M68_RS04190 (G3M68_04190)	-	895914..896099 (-)	186	Protein_845	hypothetical protein	-
G3M68_RS04195 (G3M68_04195)	-	896100..896390 (-)	291	WP_000159813.1	hypothetical protein	-
G3M68_RS04200 (G3M68_04200)	-	896387..896843 (-)	457	Protein_847	mobilization protein	-
G3M68_RS04205 (G3M68_04205)	-	896840..897780 (-)	941	Protein_848	ATPase, T2SS/T4P/T4SS family	-
G3M68_RS04210 (G3M68_04210)	-	897780..898079 (-)	300	WP_000660159.1	hypothetical protein	-
G3M68_RS04215 (G3M68_04215)	-	898076..898339 (-)	264	WP_001898911.1	hypothetical protein	-
G3M68_RS04220 (G3M68_04220)	-	898329..898625 (-)	297	WP_000422457.1	hypothetical protein	-
G3M68_RS04225 (G3M68_04225)	comB10	898695..899960 (-)	1266	WP_163498003.1	DNA type IV secretion system protein ComB10	Machinery gene
G3M68_RS04230 (G3M68_04230)	-	899960..901477 (-)	1518	WP_163498004.1	TrbG/VirB9 family P-type conjugative transfer protein	-
G3M68_RS04235 (G3M68_04235)	-	901477..902463 (-)	987	WP_163498005.1	VirB8/TrbF family protein	-
G3M68_RS04240 (G3M68_04240)	-	902593..904515 (-)	1923	WP_163498006.1	type IA DNA topoisomerase	-

Sequence

Protein

• Length: 421 a.a.
• Molecular weight: 47601.00 Da
• Isoelectric Point: 10.1503

>NTDB_id=369706 G3M68_RS04225 WP_163498003.1 898695..899960(-) (comB10) [Helicobacter pylori strain GCT 43]
MGFFRVIRNAPIVSVFIVLMLIFCAWFFLYDDSSPKAVRNYVKGKFPISDYLYKKADKKKIPPQNNVVKQEIKEEEIKKS
CKGQITDNKGNLIDDDCNIIATQKQVNKLPNLPKDILKTKPTVASNPFNYNTANEDEKTRLVILASRISSQKETQPPISI
KDSVSNIKSKEKREFEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGR
AVLIPKGSKAIGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNG
LLIGLTSGLTEAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMRDQIRIKPIITIREGSHIFISPNTDIWFPIP
KNNEVLAKFFNEEKEQNNDTK

Nucleotide

• Length: 1266 bp

>NTDB_id=369706 G3M68_RS04225 WP_163498003.1 898695..899960(-) (comB10) [Helicobacter pylori strain GCT 43]
ATGGGCTTTTTTAGAGTAATTAGAAACGCACCGATTGTAAGTGTCTTTATTGTTTTGATGCTTATTTTTTGTGCATGGTT
TTTCCTTTATGATGATAGCTCGCCTAAAGCAGTGAGAAATTATGTTAAAGGCAAGTTTCCGATCTCTGATTATCTCTACA
AAAAAGCGGATAAAAAGAAGATCCCACCACAGAACAATGTCGTTAAACAAGAGATTAAAGAAGAAGAAATTAAAAAATCT
TGTAAGGGTCAGATAACAGATAATAAGGGTAATTTAATAGATGATGATTGCAATATTATAGCCACTCAAAAACAAGTTAA
TAAATTACCAAACTTACCAAAAGATATACTTAAAACCAAACCTACTGTTGCCTCCAATCCTTTCAACTACAATACCGCTA
ACGAAGATGAAAAAACCCGCCTTGTGATTTTAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAACCTCCCATTTCTATA
AAAGATAGTGTTTCTAACATAAAATCTAAAGAAAAACGAGAGTTTGAAAAAGAATACGGCTCTAGCGGGTTTAAAAATTT
TAAAAGAAAAAATGTAGCGAGCAGTGAAAACAAACTTTTAAGGACGATTACAGCTGACAGGATGATCCCAGCCATTCTGA
TCACTCCTATTAGCAGTGAAATAGGGGGGAGTAAGATAGTCGCTCAAGTGGAGAGCGATATATACGCAACGATGGGTAGA
GCGGTTTTAATCCCTAAAGGGAGTAAAGCCATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAAT
TGCTTGGAACAGGATCATCACGCCACAAGGGGTTAATATTATTTTAAGCGATGCTAAGGGAGCTGATGTCAAGGGTTATA
ACGGCATGATAGGCACACTCCATAACAAATATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGT
CTACTCATAGGTCTTACTAGCGGTCTTACCGAAGCGATGAAAAACAAAAGGGGTGGTTTTAACCAAAACTATTTTGGAGA
CTATATGATGATGCAAATGACGAGGCAAACTGGTATCAGCCTAAATAACATTATCGCTCAAATCATGCGAGATCAAATCA
GGATTAAGCCCATTATCACTATTAGAGAGGGAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCT
AAAAACAATGAAGTCTTAGCGAAATTTTTTAATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (202-397)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	57.196	64.371	0.368