Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   G3M68_RS03855 Genome accession   NZ_CP048600
Coordinates   821018..821896 (-) Length   292 a.a.
NCBI ID   WP_163497973.1    Uniprot ID   -
Organism   Helicobacter pylori strain GCT 43     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 816018..826896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M68_RS03825 (G3M68_03825) mobA 816398..817003 (-) 606 WP_163497971.1 molybdenum cofactor guanylyltransferase MobA -
  G3M68_RS03830 (G3M68_03830) moaA 817089..818054 (+) 966 WP_163497972.1 GTP 3',8-cyclase MoaA -
  G3M68_RS03835 (G3M68_03835) - 818314..819129 (+) 816 WP_097703272.1 hypothetical protein -
  G3M68_RS03840 (G3M68_03840) - 819141..819443 (+) 303 WP_097703271.1 hypothetical protein -
  G3M68_RS07945 - 819587..820009 (+) 423 WP_240328486.1 hypothetical protein -
  G3M68_RS07950 (G3M68_03845) - 819957..820346 (+) 390 WP_240328487.1 sortase -
  G3M68_RS03850 (G3M68_03850) - 820415..820729 (+) 315 WP_097703270.1 YkgJ family cysteine cluster protein -
  G3M68_RS03855 (G3M68_03855) pilA 821018..821896 (-) 879 WP_163497973.1 signal recognition particle-docking protein FtsY Machinery gene
  G3M68_RS03860 (G3M68_03860) - 821902..822459 (-) 558 WP_001220403.1 hypothetical protein -
  G3M68_RS03865 (G3M68_03865) - 822557..823225 (+) 669 WP_163498378.1 5-formyltetrahydrofolate cyclo-ligase -
  G3M68_RS03870 (G3M68_03870) rny 823203..824714 (+) 1512 WP_001910024.1 ribonuclease Y -
  G3M68_RS03875 (G3M68_03875) - 824715..826031 (-) 1317 WP_240328491.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 32599.86 Da        Isoelectric Point: 7.4171

>NTDB_id=369705 G3M68_RS03855 WP_163497973.1 821018..821896(-) (pilA) [Helicobacter pylori strain GCT 43]
MFNFFKKIVNKIKGEEKEKKRENILKEELEEILIGFDIQYDLIESLLKHLGDLVTPKQLEVALLRFVRGESYYDKTRLKT
ITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNVQVISAKEGSDPSSLAYNTI
ESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQTKIFHETLALDGVIMTKL
DGTSRGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLVDAVFVEQ

Nucleotide


Download         Length: 879 bp        

>NTDB_id=369705 G3M68_RS03855 WP_163497973.1 821018..821896(-) (pilA) [Helicobacter pylori strain GCT 43]
ATGTTTAATTTTTTCAAAAAAATTGTCAATAAGATTAAGGGCGAAGAGAAAGAAAAAAAGCGTGAAAATATCCTTAAAGA
GGAATTAGAAGAAATTTTGATTGGCTTTGACATCCAATACGATTTGATAGAGAGCCTGTTAAAGCATTTAGGCGATTTAG
TTACGCCCAAGCAATTAGAAGTCGCTTTGTTGCGTTTTGTGCGTGGGGAAAGTTACTATGATAAAACCCGCCTAAAAACT
ATCACCACAAAACCCTTAGTGCATTTGATCGTGGGGGTTAATGGGGCGGGTAAAACCACAACGATCGCTAAATTAGCCAA
ACTCTCTTTAAAACAGCATAAAAAAGCGCTTTTAGGAGCCGGCGATACCTTTAGAGCAGCCGCAGTCAAACAGCTCCAAT
TATGGGGCGAAAAGCTTAACGTTCAAGTCATTAGCGCTAAAGAAGGGAGCGATCCAAGCTCTTTAGCTTACAACACCATA
GAAAGCGCGATCGCTAAAAATATAGATGAAGTTTTTATAGACACCGCTGGGAGGTTACACAACCAGACCAACCTTAAAAA
CGAGCTTTCTAAAATCGCGCGCACCTGCTCTAAAGTTTTAAAAGACGCCCCCTTTTATAAATTCCTTATTTTAGACGGCA
CGCAAGGGAGTTCTGGGCTAACGCAAACGAAAATTTTCCATGAGACTTTGGCGCTAGATGGCGTGATTATGACTAAGCTT
GATGGCACTTCTAGGGGCGGAGCGATTTTAAGCGTGCTGTATGAGTTGAAATTACCCATTCTTTATTTAGGAATGGGCGA
AAAAGAAGACGATTTGATCGCTTTTGATGAAGAACGCTTTATAGAAGATTTGGTTGATGCGGTGTTTGTGGAACAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(86-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.264

92.123

0.38