Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G3M68_RS03715 Genome accession   NZ_CP048600
Coordinates   788109..789629 (+) Length   506 a.a.
NCBI ID   WP_163497959.1    Uniprot ID   -
Organism   Helicobacter pylori strain GCT 43     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 783109..794629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M68_RS03685 (G3M68_03685) moaC 783256..783732 (+) 477 WP_001131542.1 cyclic pyranopterin monophosphate synthase MoaC -
  G3M68_RS03690 (G3M68_03690) hpaA 783851..784633 (+) 783 WP_163497955.1 flagellar sheath lipoprotein HpaA -
  G3M68_RS03695 (G3M68_03695) - 784662..785498 (+) 837 WP_163497956.1 outer membrane protein -
  G3M68_RS03700 (G3M68_03700) tig 785611..786966 (+) 1356 WP_163497957.1 trigger factor -
  G3M68_RS03705 (G3M68_03705) clpP 786987..787574 (+) 588 WP_000540576.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  G3M68_RS03710 (G3M68_03710) def 787579..788103 (+) 525 WP_163497958.1 peptide deformylase -
  G3M68_RS03715 (G3M68_03715) comM 788109..789629 (+) 1521 WP_163497959.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G3M68_RS03720 (G3M68_03720) - 789654..791714 (+) 2061 WP_163497960.1 heavy metal translocating P-type ATPase -
  G3M68_RS03725 (G3M68_03725) - 791763..793025 (+) 1263 Protein_750 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57279.34 Da        Isoelectric Point: 8.5412

>NTDB_id=369704 G3M68_RS03715 WP_163497959.1 788109..789629(+) (comM) [Helicobacter pylori strain GCT 43]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKRPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSTTKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNFEAKKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=369704 G3M68_RS03715 WP_163497959.1 788109..789629(+) (comM) [Helicobacter pylori strain GCT 43]
ATGATTAACACAATATTTTGTGCGACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAGCTCTATCCAAGAAGCCAAGCAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATTAAACCCAATTCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACGCCCCCATGCTAAAG
TCATTGCGCCTAAGGCTAATGAGGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTACAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGCCCAGGGTGTGGGAAAAGCATGATTATTAATCGC
ATGCGTTATATCTTGCCTCCCTTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAGAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCTGGCGAAATCGCCTTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCCCATTTTAAAAAGGAT
ATTTTGGAAGCTTTGAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCATAGCAAAATTGAATACGAAAC
CTCTTTTTTGTTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCACCACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTATTATTAGCTTTCAAGCAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAATTTTGAAG
CAAAAAAGTTGTTAGAACAGGCGATTGAAAGGTTTAATCTGTCCATGCGTTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCAGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.431

100

0.974
  comM Acinetobacter baylyi ADP1

36.204

100

0.366