Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   D069_RS17370 Genome accession   NZ_CP041143
Coordinates   3453613..3454998 (-) Length   461 a.a.
NCBI ID   WP_105937245.1    Uniprot ID   -
Organism   Bacillus velezensis strain UCMB5007     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3448613..3459998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D069_RS17335 (D069_3236) flgL 3448787..3449704 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  D069_RS17340 (D069_3237) flgK 3449716..3451233 (-) 1518 WP_105937247.1 flagellar hook-associated protein FlgK -
  D069_RS17345 (D069_3238) - 3451249..3451731 (-) 483 WP_003151394.1 flagellar protein FlgN -
  D069_RS17350 (D069_3239) flgM 3451746..3452012 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  D069_RS17355 (D069_3240) - 3452082..3452501 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  D069_RS17360 (D069_3241) comFC 3452576..3453265 (-) 690 WP_199791910.1 phosphoribosyltransferase family protein Machinery gene
  D069_RS17365 (D069_3242) - 3453271..3453555 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  D069_RS17370 (D069_3243) comFA 3453613..3454998 (-) 1386 WP_105937245.1 DEAD/DEAH box helicase Machinery gene
  D069_RS17375 (D069_3244) - 3455106..3455954 (-) 849 WP_105937244.1 DegV family protein -
  D069_RS17380 (D069_3245) degU 3456052..3456741 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  D069_RS17385 (D069_3246) degS 3456818..3457981 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  D069_RS17390 (D069_3247) - 3458204..3458851 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52432.67 Da        Isoelectric Point: 9.9926

>NTDB_id=369700 D069_RS17370 WP_105937245.1 3453613..3454998(-) (comFA) [Bacillus velezensis strain UCMB5007]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRINGFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWASSAKRQIT
YCRACVMMGRADELTSLYSWNQASENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVHELLPRLKKSFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
CQKLQSELPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRNGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=369700 D069_RS17370 WP_105937245.1 3453613..3454998(-) (comFA) [Bacillus velezensis strain UCMB5007]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAACGGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGTCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACATGAACTGCTGCCGAGACTGAAAAA
ATCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTT
TGCCAAAAACTTCAATCAGAGCTGCCTGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAAACG
GCCGACTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATTGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(329-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.609

99.783

0.625

Multiple sequence alignment