Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   D069_RS17360 Genome accession   NZ_CP041143
Coordinates   3452576..3453265 (-) Length   229 a.a.
NCBI ID   WP_199791910.1    Uniprot ID   -
Organism   Bacillus velezensis strain UCMB5007     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3447576..3458265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D069_RS17325 (D069_3234) fliW 3447666..3448097 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  D069_RS17330 (D069_3235) - 3448127..3448696 (-) 570 WP_007407476.1 DUF6470 family protein -
  D069_RS17335 (D069_3236) flgL 3448787..3449704 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  D069_RS17340 (D069_3237) flgK 3449716..3451233 (-) 1518 WP_105937247.1 flagellar hook-associated protein FlgK -
  D069_RS17345 (D069_3238) - 3451249..3451731 (-) 483 WP_003151394.1 flagellar protein FlgN -
  D069_RS17350 (D069_3239) flgM 3451746..3452012 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  D069_RS17355 (D069_3240) - 3452082..3452501 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  D069_RS17360 (D069_3241) comFC 3452576..3453265 (-) 690 WP_199791910.1 phosphoribosyltransferase family protein Machinery gene
  D069_RS17365 (D069_3242) - 3453271..3453555 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  D069_RS17370 (D069_3243) comFA 3453613..3454998 (-) 1386 WP_105937245.1 DEAD/DEAH box helicase Machinery gene
  D069_RS17375 (D069_3244) - 3455106..3455954 (-) 849 WP_105937244.1 DegV family protein -
  D069_RS17380 (D069_3245) degU 3456052..3456741 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  D069_RS17385 (D069_3246) degS 3456818..3457981 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25243.86 Da        Isoelectric Point: 8.0191

>NTDB_id=369699 D069_RS17360 WP_199791910.1 3452576..3453265(-) (comFC) [Bacillus velezensis strain UCMB5007]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSCERLAERGFNQSELLASLLGLPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=369699 D069_RS17360 WP_199791910.1 3452576..3453265(-) (comFC) [Bacillus velezensis strain UCMB5007]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCTGCGAACGGC
TGGCCGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGACTGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment