Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G3M68_RS03070 Genome accession   NZ_CP048600
Coordinates   657870..658328 (+) Length   152 a.a.
NCBI ID   WP_000783589.1    Uniprot ID   -
Organism   Helicobacter pylori strain GCT 43     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 652870..663328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M68_RS03050 (G3M68_03050) dnaK 652954..654816 (+) 1863 WP_163497895.1 molecular chaperone DnaK -
  G3M68_RS03055 (G3M68_03055) - 655054..655630 (-) 577 Protein_619 hypothetical protein -
  G3M68_RS03060 (G3M68_03060) - 655751..656668 (+) 918 WP_000603983.1 O-acetylserine-dependent cystathionine beta-synthase -
  G3M68_RS03065 (G3M68_03065) - 656689..657831 (+) 1143 WP_163498371.1 cystathionine gamma-synthase -
  G3M68_RS03070 (G3M68_03070) luxS 657870..658328 (+) 459 WP_000783589.1 S-ribosylhomocysteine lyase Regulator
  G3M68_RS03075 (G3M68_03075) - 658515..660215 (+) 1701 WP_341540322.1 5'-nucleotidase C-terminal domain-containing protein -
  G3M68_RS03080 (G3M68_03080) tlpB 660427..662124 (+) 1698 WP_163497897.1 methyl-accepting chemotaxis protein TlpB -
  G3M68_RS03085 (G3M68_03085) - 662155..662919 (+) 765 WP_163497898.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17355.74 Da        Isoelectric Point: 6.3774

>NTDB_id=369692 G3M68_RS03070 WP_000783589.1 657870..658328(+) (luxS) [Helicobacter pylori strain GCT 43]
MKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHASYVVDWSPMGC
QTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQDLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=369692 G3M68_RS03070 WP_000783589.1 657870..658328(+) (luxS) [Helicobacter pylori strain GCT 43]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTGTCGCTGATCGCAAAAA
GGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAACCAAGATCACATGGACATGCCAAGCT
TGCACTCTTTAGAGCATTTAGTCGCTGAAATCATCCGTAACCATGCCAGTTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACGGGGTTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGACGATGCAAGA
CGTGTTAAAGGCTAAAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGCGCGC
AGGATTTAGCGCGCGCTTTTTTGGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.135

92.763

0.382