Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   G3M69_RS02985 Genome accession   NZ_CP048599
Coordinates   634157..635035 (-) Length   292 a.a.
NCBI ID   WP_163562970.1    Uniprot ID   -
Organism   Helicobacter pylori strain GCT 97     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 629157..640035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M69_RS02950 (G3M69_02950) mobA 629347..629952 (-) 606 WP_097703274.1 molybdenum cofactor guanylyltransferase MobA -
  G3M69_RS02955 (G3M69_02955) moaA 630038..631003 (+) 966 WP_163562967.1 GTP 3',8-cyclase MoaA -
  G3M69_RS02965 (G3M69_02965) - 631263..632120 (+) 858 Protein_589 hypothetical protein -
  G3M69_RS02975 (G3M69_02975) - 632450..633521 (+) 1072 Protein_590 interferon alpha-inducible IFI6/IFI27 family protein -
  G3M69_RS02980 (G3M69_02980) - 633582..633902 (+) 321 WP_163562969.1 YkgJ family cysteine cluster protein -
  G3M69_RS02985 (G3M69_02985) pilA 634157..635035 (-) 879 WP_163562970.1 signal recognition particle-docking protein FtsY Machinery gene
  G3M69_RS02990 (G3M69_02990) - 635042..635599 (-) 558 WP_163562971.1 hypothetical protein -
  G3M69_RS02995 (G3M69_02995) - 635697..636365 (+) 669 WP_205424863.1 5-formyltetrahydrofolate cyclo-ligase -
  G3M69_RS03000 (G3M69_03000) rny 636343..637854 (+) 1512 WP_240329114.1 ribonuclease Y -
  G3M69_RS03005 (G3M69_03005) - 637855..639171 (-) 1317 WP_240329115.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 32525.77 Da        Isoelectric Point: 7.4169

>NTDB_id=369659 G3M69_RS02985 WP_163562970.1 634157..635035(-) (pilA) [Helicobacter pylori strain GCT 97]
MFNFFKKIVNKIKGEEKEKKRENIPKEELEEILIGFDIQYDLIESLLKHLGDLVTPKQLEVALLRFVRGESYYDKTRLKT
ITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNVQVISAKEGSDPSSLAYNTI
ESALAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKL
DGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLVDAVFVEQ

Nucleotide


Download         Length: 879 bp        

>NTDB_id=369659 G3M69_RS02985 WP_163562970.1 634157..635035(-) (pilA) [Helicobacter pylori strain GCT 97]
ATGTTTAATTTTTTCAAAAAAATTGTCAATAAGATTAAGGGCGAAGAGAAAGAAAAAAAGCGTGAAAATATCCCTAAAGA
GGAATTAGAAGAAATTTTGATTGGCTTTGATATCCAATACGATTTGATAGAGAGCTTGTTAAAGCATTTAGGCGATTTGG
TTACGCCCAAGCAATTGGAAGTCGCTTTGTTGCGTTTTGTGCGTGGGGAAAGCTACTATGATAAAACCCGCCTAAAGACC
ATCACCACAAAGCCCTTAGTGCATTTGATCGTGGGGGTTAATGGGGCGGGTAAAACCACAACAATCGCTAAATTAGCCAA
GCTTTCTTTAAAACAGCATAAAAAAGCGCTTTTAGGGGCAGGCGATACCTTTAGAGCGGCCGCAGTCAAACAGCTCCAAT
TATGGGGCGAAAAGCTTAACGTTCAAGTCATTAGCGCTAAAGAAGGGAGCGATCCAAGCTCTCTAGCTTATAACACCATA
GAAAGCGCGCTCGCTAAAAATATAGATGAAGTTTTTATAGACACCGCCGGGAGGTTGCACAACCAGACCAACCTTAAAAA
CGAGCTTTCTAAAATCGCGCGCACCTGCTCTAAAGTTTTAAAAGACGCCCCCTTTTACAAATTCCTTATTTTAGACGGCA
CGCAAGGGAGTTCTGGGCTAACGCAAGCCAAGATTTTCCATGAGACTTTGGCGTTAGACGGCGTGATCATGACTAAGCTT
GATGGCACTTCTAAGGGCGGAGCGATTTTAAGCGTGCTGTATGAGTTGAAATTACCCATTCTTTATTTAGGAATGGGCGA
AAAAGAAGACGATTTGATCGCTTTTGATGAAGAACGCTTTATAGAAGATTTGGTTGATGCGGTGTTTGTGGAACAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(86-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.573

91.438

0.38