Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   D069_RS04310 Genome accession   NZ_CP041143
Coordinates   850266..851057 (+) Length   263 a.a.
NCBI ID   WP_045207011.1    Uniprot ID   -
Organism   Bacillus velezensis strain UCMB5007     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 845266..856057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D069_RS04285 (D069_0805) - 847261..848145 (+) 885 WP_105937953.1 PhzF family phenazine biosynthesis isomerase -
  D069_RS04290 (D069_0806) - 848222..848806 (+) 585 WP_140957259.1 nitroreductase -
  D069_RS04295 (D069_0807) - 848845..849036 (-) 192 WP_003155508.1 YfhD family protein -
  D069_RS04300 - 849107..849217 (-) 111 WP_003155504.1 YfhE family protein -
  D069_RS04305 (D069_0808) - 849275..850174 (-) 900 WP_105937952.1 TIGR01777 family oxidoreductase -
  D069_RS04310 (D069_0809) recX 850266..851057 (+) 792 WP_045207011.1 recombination regulator RecX Regulator
  D069_RS04315 (D069_0810) - 851064..851378 (+) 315 WP_007408553.1 YfhH family protein -
  D069_RS04320 (D069_0811) - 851523..852716 (+) 1194 WP_105938251.1 MFS transporter -
  D069_RS04325 (D069_0812) - 852756..853145 (-) 390 WP_105937951.1 DUF2606 family protein -
  D069_RS04330 (D069_0813) - 853108..854019 (-) 912 WP_105937950.1 serine protease -
  D069_RS04335 - 854164..854316 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  D069_RS04340 (D069_0814) - 854440..854709 (+) 270 WP_003155492.1 YfhJ family protein -
  D069_RS04345 (D069_0815) - 854841..855368 (+) 528 WP_044801977.1 SH3 domain-containing protein -
  D069_RS04350 (D069_0816) - 855454..855789 (+) 336 WP_007408558.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30994.18 Da        Isoelectric Point: 6.2735

>NTDB_id=369649 D069_RS04310 WP_045207011.1 850266..851057(+) (recX) [Bacillus velezensis strain UCMB5007]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRYDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=369649 D069_RS04310 WP_045207011.1 850266..851057(+) (recX) [Bacillus velezensis strain UCMB5007]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTATGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCACGGCGATGACGTGAAAAAAGCCTTTAATCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCTTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGCGCGTTTACATTTGATGAGCAAATACAAGAG
GCGCTGAAACATATCGGCAAAATCCTCAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAAACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

78.707

100

0.787

Multiple sequence alignment